GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-21 20:05:39, GGGenome : Garter snake genome, Thanmnophis_sirtalis-6.0/thaSir1 (Jun, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

NW_013657768v1:240554-240568
TCTACGGCAAAAGGCAAGAGTACCAAAATT240554TTCATTGACAACATTCAGCAAGTGTTTTGCTCTTGGAAGCCTAAA
NW_013657858v1:1044866-1044880
TGCTTTAAGCCCTTTTCTTATATGAGCCAC1044866TTCATTGACAACATTCCCTGCATTTCAGGAGCAATTTTTAAGTTA
NW_013658931v1:258711-258725
TCATTTCAAGACTCTTACTGTTTTCATTTC258711TTCATTGACAACATTTATGTGTGCAGTAATAATGCAAGGGAGGAG
NW_013659135v1:222210-222224
ATGTTCAGTGCCTCCTGGGTCATCTCTGTA222210TTCATTGACAACATTTCTGCTGGGACTGCTTTGAAAGTGAAGTAG
NW_013657803v1:1056606-1056620
AGTCCATGAACAAAAGGAAATGATTGTTCC1056606AATGTTGTCAATGAACATTCGGGATGATAAAAAATGGATGAAATT
NW_013657833v1:1197548-1197562
CTCTGAAATGGGACGATTAATGCTAAGAAA1197548AATGTTGTCAATGAAATACAGATAGCAGACATTATTATCCCATTC
NW_013660079v1:28558-28572
TATCTCTCTCTCTATCTATCATCTATTTGT28558AATGTTGTCAATGAAAATGGGGGGGGGAGTGGTCTCCACTCACAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/thaSir1/TTCATTGACAACATT
lang : en | db : thaSir1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.76:28759/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.76:28759/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.088 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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