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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-27 13:38:08, GGGenome : Manatee genome, Broad v1.0/triMan1 (Oct, 2011)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

JH594618:26161228-26161242
TCCTCCTCAAATTACTAAATTAGATGCTAT26161228AATGTTGTCAATGAATGTATTCAGATTTGATGGACAGTTTCTCAA
JH594638:19774396-19774410
GAACAGTGGAAACGAGCTATGGATTATTTA19774396AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
JH594778:3473747-3473761
ACTGTTCATTTCTGTACTTCTTAGTGATAA3473747AATGTTGTCAATGAAGTACATTCTTGATTTTAGTAATTTAAAAAC
JH594637:19936062-19936076
GATCAGAGAGAGAGATCTTTTTGAAGGTAA19936062TTCATTGACAACATTGTCCTATTTATTTGCTAGTTGTGGGACTAT
JH594642:15980732-15980746
ATTGCAACAAACTAGCATACGTACACTCTA15980732TTCATTGACAACATTAGCATATAATATGAGTTTATTTTAGAACTT
JH594653:3242792-3242806
TGATTTGCTTGCTGTATCCCCCATAATCGA3242792TTCATTGACAACATTTATTTGTGTATCCCTGATGGGCTGCATATT
JH594656:6178757-6178771
TCAAAACATGTTTATTTTCCTTAAATGATA6178757TTCATTGACAACATTTGACTCTTGTGCAAAAATGCAAAAATATCA
JH594659:11209269-11209283
AACGCTGCTGGGGGCAGTGGGTCACTCTCT11209269TTCATTGACAACATTGACCATGGGGTAGATTTAACCAAGGCCACT
JH594663:1770375-1770389
CCTGTTTTCTGGGGCCACTTCTGGGCGTGC1770375TTCATTGACAACATTTTACAGATGAAGAAACTGAGCCTCAAGGAG
JH594715:7253222-7253236
AATAAAACCAAATTAAGAGGCTCTGTAATT7253222TTCATTGACAACATTCTGCATACAATAGAATATTACTACACATGA
JH594785:374978-374992
CCTACCACAACATCTCTTCCCAACTTTGTG374978TTCATTGACAACATTGGTAGCTGCAAATCAACCATGGTGGGAGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/triMan1/AATGTTGTCAATGAA
lang : ja | db : triMan1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.214 | 0.205 | search_plus_done; http://172.18.8.78:28040/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.219 | 0.005 | search_minus_done; http://172.18.8.78:28040/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=47
0.221 | 0.002 | cgi_end;

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