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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-23 16:18:48, GGGenome : Tree shrew genome, Broad/tupBel1 (Dec, 2006)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

scaffold_11528.1-675751:520739-520753
ATCATAAGGGTGAAGCTGGCGAGCTGTGGT520739TTCATTGACAACATTGTTTTGGCCAGGAAGTTTTTCACACTCTAC
scaffold_114342.1-283029:121435-121449
ATACAGGTCCTCATTGTTCATCTGGATAAA121435TTCATTGACAACATTTCATCATTTTATTTTATACGTACGTATAAA
scaffold_118674.1-147578:103917-103931
GCTGGCATTCCCAGAACCAATGGCTTCAGA103917TTCATTGACAACATTTTGACTTACTCATATTTGAATCATCAGAAC
scaffold_122243.1-494798:140867-140881
CAGAATATATTATCACTTTCAACACAGATT140867TTCATTGACAACATTTTGTGGGCATCCACTTAATATTAATATTAA
scaffold_123605.1-154869:22909-22923
GAATCAATCTCATAAAAATTAACATTCATT22909TTCATTGACAACATTATTAGATGCATTGGTAAATCTGACTCTGTT
scaffold_125536.1-31423:4925-4939
TATGTATATTTTCTTAATTTTCAGGAGTCT4925TTCATTGACAACATTTTTACTTAAATAATTTAATTTTAATGTAAT
scaffold_125714.1-255805:205183-205197
ACCTGGCATTTACTACGCACTCAATTAATA205183TTCATTGACAACATTAGTAAGACTGGAGTTCTCATAACAAACCAG
scaffold_150409.1-134544:52292-52306
AGTATGCTGCACTCCAAATACTATTGTGTT52292TTCATTGACAACATTCACTATTACATATGCATATGAAAAACAGGC
scaffold_5819.1-534619:429275-429289
GTATATATGCAATATATATATGTGCCAATA429275AATGTTGTCAATGAAATTAGTTTTTCTCTTGTTAATTGATTTTGT
scaffold_7197.1-17875:8011-8025
ATGATGTTTCTTAACATATATTCTCCATAT8011AATGTTGTCAATGAATCATTTAAGTACACAAACCATAATATAGTA
scaffold_11267.1-49940:47534-47548
ACAATTATTCACAGTATGTCCTAGAGTATA47534AATGTTGTCAATGAAATCTCCAGTAGATTAGGTAAACAAAAGTCA
scaffold_15577.1-4791:4294-4308
ACTTTTTTTTGAAGGTTATCAGACAAATAA4294AATGTTGTCAATGAATATAAGTTTAAATGTGTCAGCAAGTACTAG
scaffold_143060.1-66805:3381-3395
TCAGGCAATATTTGAATGAATAAATCAATC3381AATGTTGTCAATGAATGACTCAATCAATGTTGTCAGCTAAGGTGC
scaffold_143186.1-28643:4215-4229
GATAAGCCTCATTCCATTTTGTGTTAGATA4215AATGTTGTCAATGAAGGAACCTTACAGTTTGTTAAATATTAGTGA
scaffold_147065.1-12318:2526-2540
AAAGATACTGGCACATATTAAAGAGGAAAA2526AATGTTGTCAATGAATTAGGAGGAAGTATGGGATGATGTAAACCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/tupBel1/TTCATTGACAACATT
lang : en | db : tupBel1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.075 | search_plus_done; http://172.18.8.77:28066/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.006 | search_minus_done; http://172.18.8.77:28066/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=42
0.091 | 0.002 | cgi_end;

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