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2025-04-07 15:05:08, GGGenome : Xenopus tropicalis genome, JGI 9.1/xenTro9 (Jul, 2016)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr1:35419739-35419753

GGAGCGATTTGCACAGAAGAAACCTGGATA35419739AATGTTGTCAATGAACGCACAGTTGCAGTCATAACTGAACCCTAT

chr4:93382576-93382590

CCAATAGCTTTGGGAATGAGCAGTGTAAGC93382576AATGTTGTCAATGAAACAAAATTATACAGGCCAATAACTTATTAT

chr2:154736189-154736203

AGGGAGTGGTGTGTGGAACTGGTATTCCAG154736189TTCATTGACAACATTACCTTGAAATAAATGGGGTTTGGAGGCAGA

chr7:82541248-82541262

ACGGGCATCTGAAAATGTGAAAATACCACA82541248TTCATTGACAACATTGTATTGAGAAGTTTATAAAATAATGTGAAG

chrUn_NW_016683401v1:415813-415827

CACTCTCACAATATTCAATATTTTGGTTGC415813TTCATTGACAACATTATTCTTATATGGTCCGGTACCGATGAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.76:28776/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.004 | search_minus_done; http://172.18.8.76:28776/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.087 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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