GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 00:51:54, GGGenome : Pediculus humanus genome, PhumU2 (Nov, 2008)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

DS235371 dna:supercontig supercontig:PhumU2:DS235371:1:284323:1
position: 78574-78588
CACGTTCGCTCTTTTTTCTCACTCCCCCCC78574TTCATTGACAACATTCGCGCACGAAACGTTGTTAACTAATCCGTG
DS235283 dna:supercontig supercontig:PhumU2:DS235283:1:462513:1
position: 341788-341802
TTTTTTTTTTCACAACGAAAATTATCCATT341788TTCATTGACAACATTTGAAAATCAGGATCAGGGTCTTATCCTTAA
DS234996 dna:supercontig supercontig:PhumU2:DS234996:1:474860:1
position: 111643-111657
AAATATTATAGGATCTAATTCTTCTCCTTT111643TTCATTGACAACATTTGTAAAAGCCGTTGCCCACGGTTGTCCTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/PhumU2/TTCATTGACAACATT
lang : en | db : PhumU2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.079 | 0.070 | search_plus_done; http://172.18.8.76:28156/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.006 | search_minus_done; http://172.18.8.76:28156/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.085 | 0.000 | cgi_end;

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