GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-12-26 22:08:20, GGGenome : Setaria italica genome, JGIv2.0 (Jan, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

3 dna:chromosome chromosome:JGIv2.0:3:1:50652576:1
position: 17158795-17158809
ATGCCTGAGCTCGACAATTTTATCGTGGTC17158795TTCATTGACAACATTCTAATCTACTCGAAGGATGAGAAGGAACAT
8 dna:chromosome chromosome:JGIv2.0:8:1:40690061:1
position: 25794060-25794074
ATGCCCGAGCTTGACAAGTTTGTCATTGTT25794060TTCATTGACAACATTCTTGTATATTCCAAGAATGAAGAGGAACAT
3 dna:chromosome chromosome:JGIv2.0:3:1:50652576:1
position: 37794145-37794159
GTGCTCTTCTGCTGTTTCTAAGTAGATCAG37794145AATGTTGTCAATGAATACTACCACAAACTTGTCCAACTCCTCCAT
4 dna:chromosome chromosome:JGIv2.0:4:1:40408058:1
position: 39713995-39714009
ATACGAATGTTGACGTTTTAAATCTGTAGT39713995AATGTTGTCAATGAACTGGTAGATGGCTCCTGTGTATTCGAGAAA
5 dna:chromosome chromosome:JGIv2.0:5:1:47253416:1
position: 44100662-44100676
CAAGCTTAACTGTCAACCATTAGAAATTAA44100662AATGTTGTCAATGAACTTGAATGAGCAAGTTTGTTGAACTGGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/Setit_JGIv2.0/TTCATTGACAACATT
lang : en | db : Setit_JGIv2.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.75:28196/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.75:28196/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=48
0.089 | 0.002 | cgi_end;

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