GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-12-04 02:41:06, GGGenome : Strigamia maritima genome, Smar1 (Feb, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JH431854 dna:scaffold scaffold:Smar1:JH431854:1:146329:1
position: 33690-33704
CAACCAAAACCACAAAACAACATAAATCTT33690TTCATTGACAACATTCAATGGCAAAACACATATAGCATCATGAAC
JH432105 dna:scaffold scaffold:Smar1:JH432105:1:558451:1
position: 552321-552335
CCATATAGAAATATGGAAAAATAGTTCACT552321TTCATTGACAACATTGTTCTCTCTCTTTCTAAATGAAATATAGAA
JH431380 dna:scaffold scaffold:Smar1:JH431380:1:254879:1
position: 237282-237296
ATCATTCTCTATAAAACGTAGAAAAAGAAA237282AATGTTGTCAATGAAAAGGTCAGGTCGGCTTTCAACTCTGATATA
JH432114 dna:scaffold scaffold:Smar1:JH432114:1:1273652:1
position: 1025624-1025638
TCGTGTTTCGAGGCATATATTTTTGTTTTA1025624AATGTTGTCAATGAACAATAATAATTCGAGCGCTGTTTATTATGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/Smar1/TTCATTGACAACATT
lang : en | db : Smar1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.76:28160/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.005 | search_minus_done; http://172.18.8.76:28160/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=48
0.090 | 0.001 | cgi_end;

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