GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 22:39:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Raphanus sativus var. sativus RNA, contig: WG3_11673.
FX671843.1:416-435
TCTCGTCGTAATGAAATCCTGGGTTCCACA416CAAGAGAGCCATAACCAAAGACCCACATCACCATCTTCTGCAGTTAAATG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_43496.
FX749915.1:618-637
TCTCGTCGTAATGAAATCCTGGGTTCCACA618CAAGAGAGCCATAACCAAAGACCCACATCACCATCTTCTGCAGTTAAATG
TSA: Raphanus sativus RS00743 mRNA sequence.
JT785290.1:849-868
TCTCGTCGTAATGAAATCCTGGGTTCCACA849CAAGAGAGCCATAACCAAAGACCCACATCACCATCTTCTGCAGTTAAATG
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:3277588-3277607
TCTCGTCGTAATGAAATCCTGGGTTCCACA3277588CAAGAGAGCCATAACCAAAGACCCACATCACCATCTTCTGCAGTTAAATG
Draba incana genome assembly, chromosome: 11.
OY755212.1:11327515-11327534
TCTCATCGTAGTGAAATCCTGGGTTCCACA11327515CAAGAGAGCCATAACCAAAGACCCACATCACCATTTTCTGCAGTTAAATG
39RDBRT_UP_042_E11_21JUL2004_087 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272589.1:283-302
TTTATAACTGCAGAAGATGGTGATGTGGGT283CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGGTTTCACTACGATGAGA
RR3BE06TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV552098.1:292-311
ACGTTAACTGCAGAAGATGGTGATGTGGGT292CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCATTACGATGAGA
RS1CG35TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX889393.1:339-358
CAGTTAACTGCAGAAGATGGTGATGTGGGT339CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCATTACGATGAGA
RR4D104TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY921158.1:296-315
CAATTAACTGCCGAAGATGGTAATGTGGGT296CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCACTACGATGAGA
RS1D488TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY929918.1:300-319
CAGTTAACTGCAGAAGATGGTGATGTGGGT300CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCATTACGATGAGA
RR3F078TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD549863.1:293-312
ACGTTAACTGCAGAAGATGGTGATGTGGGT293CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCATTACGATGAGA
Raphanus sativus mRNA, clone: RSCF02C08, 5' end sequence.
FY428346.1:252-271
CATTTAACTGCAGAAGATGGTGATGTGGGT252CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCATTACGACGAGA
Raphanus sativus mRNA, clone: RSCL06O04, 5' end sequence.
FY435145.1:239-258
ATCGTCCCTGACGAAGATGGTGATGTGGGT239CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCATTACGACGAGA
Raphanus sativus mRNA, clone: RSCL11A01, 5' end sequence.
FY436530.1:250-269
ATCGTCCCTGACGAAGATGGTGATGTGGGT250CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCATTACGACGAGA
Raphanus sativus mRNA, clone: RSCL15N24, 5' end sequence.
FY438152.1:239-258
ATCGTCCCTGACGAAGATGGTGATGTGGGT239CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCATTACGACGAGA
Rattus norvegicus DNA, BAC clone: RNB1-173D15, 3'end.
DH635551.1:478-497
GCACTGAGGGTGGCCTTGAGCAAGGTATGC478CTTTGGTTATGGCTCTCTTGAGTCTCCTTATGTAGATCAGATGGAGAAAG
Rattus norvegicus DNA, BAC clone: RNB2-007A17, 3' end.
FT004161.1:478-497
GCACTGAGGGTGGCCTTGAGCAAGGTATGC478CTTTGGTTATGGCTCTCTTGAGTCTCCTTATGTAGATCAGATGGAGAAAG
Rattus norvegicus DNA, BAC clone: RNB2-271D01, 5' end.
FT101051.1:478-497
GCACTGAGGGTGGCCTTGAGCAAGGTATGC478CTTTGGTTATGGCTCTCTTGAGTCTCCTTATGTAGATCAGATGGAGAAAG
Rattus norvegicus clone CH230-362A3, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC118445.3:48139-48158
GCACTGAGGGTGGCCTTGAGCAAGGTATGC48139CTTTGGTTATGGCTCTCTTGAGTCTCCTTATGTAGATCAGATGGAGAAAG
Rattus norvegicus clone CH230-34F2, WORKING DRAFT SEQUENCE, 4 ordered pieces.
AC130960.4:181961-181980
GCACTGAGGGTGGCCTTGAGCAAGGTATGC181961CTTTGGTTATGGCTCTCTTGAGTCTCCTTATGTAGATCAGATGGAGAAAG
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:40340548-40340567
CATTTAACTGCAGAAGATGGTGATGTGGGT40340548CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCATTACGACGAGA
Draba incana genome assembly, chromosome: 9.
OY755210.1:26688814-26688833
CATTTAACTGCAGAAAATGGTGATGTGGGT26688814CTTTGGTTATGGCTCTCTTGTGTGGAACCCAGGATTTCACTACGATGAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAAGAGAGCCATAACCAAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAGAGAGCCATAACCAAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.145 | 0.136 | search_plus_done; http://172.18.8.135:50400/match?q=CAAGAGAGCCATAACCAAAG&k=0&no_gap=0&offset=0&limit=50
0.822 | 0.677 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTGGTTATGGCTCTCTTG&k=0&no_gap=0&offset=0&limit=45
0.833 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).