GGGenome | Results

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2025-03-16 19:59:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 3260 from Patent EP2519097.
JB350848.1:531-552

GGTATGAAGAAAACAAGGAGCAGAGAAGCA531TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

Sequence 3261 from Patent EP2519097.
JB350849.1:519-540

GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

Sequence 3260 from patent US 9493785.
KH362759.1:531-552

GGTATGAAGAAAACAAGGAGCAGAGAAGCA531TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

Sequence 3261 from patent US 9493785.
KH362760.1:519-540

GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

Sequence 3260 from Patent EP3056569.
LQ606409.1:531-552

GGTATGAAGAAAACAAGGAGCAGAGAAGCA531TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

Sequence 3261 from Patent EP3056569.
LQ606410.1:519-540

GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

Sequence 3260 from patent US 10351873.
MO207981.1:531-552

GGTATGAAGAAAACAAGGAGCAGAGAAGCA531TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

Sequence 3261 from patent US 10351873.
MO207982.1:519-540

GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

AS1RN5P1H02.ab1 Healthy Roots (RN) Arachis stenosperma cDNA 5', mRNA sequence.
EH043930.1:96-117

GGTATGAAGAAAACAAGGAGCAGAGAAGCA96TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGAATTAAGA

TFR5_19_A06_E001.g1 USDA-Tifton Peanut Library TFR5 Arachis hypogaea cDNA clone TFR5-019-41_A06 5', mRNA sequence.
ES720496.1:437-458

GGTATGAAGAAAACAAGGAGCAGAGAAGCA437TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

TFR5_24_F12_E001.g1 USDA-Tifton Peanut Library TFR5 Arachis hypogaea cDNA clone TFR5-024-94_F12 5', mRNA sequence.
ES720744.1:410-431

GGTATGAAGAAAACAAGGAGCAGAGAAGCA410TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

VBL1_39_K11_E001.g1 Normalized cDNA library from cotyledon and young leaves of peanut Arachis hypogaea cDNA, mRNA sequence.
GO266249.1:6-27

AAGCA6TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

VBL6_35_F21_E001.g1 Normalized cDNA library from developing embryos of peanut Arachis hypogaea cDNA, mRNA sequence.
GO331236.1:519-540

GGTATGAAGAAAACAAGGAGCAGAGAAGCA519TATGAGGTTTCAAGGGATGGTGCGACCGTAGAAAAATTCTGATGGATTAAGA

Ipa.ADAB-aac45e08.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence.
GW964651.1:518-539

GGTATGAAGAAAACGAGGAGCAGAGAAGCA518TATGAGGTTTCAAGGGATGGTGTGACCGTAAAAAAATTCTGATGGATTAGGA

Ipa.ADAB-aad26f03.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence.
GW969326.1:520-541

GGTATGAAGAAAACAAGGAGCAGAGAAGCA520TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATT

NRL_007219 Root cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocpnra0_0088_G10.ab1, mRNA sequence.
JK185328.1:523-544

GGTATGAAGAAAACAAGGAGCAGAGAAGCA523TATGAGGTTTCAAGGGATGGTGTGACCGTAG

RILL_010018 Ralstonia solanacearum challenged leaf cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocprla0_0119_A02.ab1, mRNA sequence.
JK198952.1:524-545

GGTATGAAGAAAACAAGGAGCAGAGAAGCA524TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

TSA: Arachis hypogaea CL1Contig6479.Arhy mRNA sequence.
EZ727463.1:608-629

GGTATGAAGAAAACAAGGAGCAGAGAAGCA608TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGGATTAAGA

Arachis stenosperma clone AS1RN5H02 microsatellite sequence.
DQ099062.1:64-85

GGTATGAAGAAAACAAGGAGCAGAGAAGCA64TATGAGGTTTCAAGGGATGGTGTGACCGTAGAAAAATTCTGATGAATTAAGA

Seladonia tumulorum genome assembly, chromosome: 4.
OU565269.1:7279943-7279964

TTGGGAAATGACCGATTCGATCTGTTTTGA7279943TATGAGGTTTCAAGGGATGGTGTAAAATTCAAGGGAAAATCGAGTATTACGA

VBL6_50_B05_E001.g1 Normalized cDNA library from developing embryos of peanut Arachis hypogaea cDNA, mRNA sequence.
GO336218.1:181-202

TATATATATATATAAATTTTTCTACGGTCA181CACCATCCCTTGAAACCTCATACGCTTCTCTGCTCCTTGTTTTCTTCATACC

TSA: Arachis hypogaea Ahy.Unigene3403 mRNA sequence.
JR544020.1:188-209

TCTTAATCCATCAGAATTTTTCTACGGTCA188CACCATCCCTTGAAACCTCATATGCTTCTCTGCTCCTTGTTTTCTTCATACC

Arachis hypogaea cultivar Shitouqi chromosome A04.
CP030986.1:102313691-102313712

TATATATATATATAAATTTTTCTACGGTCA102313691CACCATCCCTTGAAACCTCATACGCTTCTCTGCTCCTTGTTTTCTTCATACC

Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:98591305-98591326

TCTTAATCCATCAGAATTTTTCTACGGTCA98591305CACCATCCCTTGAAACCTCATATGCTTCTCTGCTCCTTGTTTTCTTCATACC

Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:111976073-111976094

TCTTAATCCATCAGAATTTTTCTACGGTCA111976073CACCATCCCTTGAAACCTCATATGCTTCTCTGCTCCTTGTTTTCTTCATACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.008 | 0.008 | search_start;
1.169 | 1.160 | search_plus_done; http://172.18.8.135:50400/match?q=TATGAGGTTTCAAGGGATGGTG&k=0&no_gap=0&offset=0&limit=50
1.299 | 0.130 | search_minus_done; http://172.18.8.135:50400/match?q=CACCATCCCTTGAAACCTCATA&k=0&no_gap=0&offset=0&limit=30
1.302 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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