# [ GGGenome | 2024-04-20 19:31:17 ] # database: Human unspliced mRNA, RefSeq 20170306 on hg38 (Apr, 2018) # query: TTCATTGACAACATT # count: 6 # query: AATGTTGTCAATGAA # count: 6 # name strand start end snippet snippet_pos snippet_end query sbjct align edit match mis del ins NR_046871.1|LINC00333|cage_peaks_associated=&cage_peaks_expressed=&coord=chr13:84140601:84606768:+ + 50811 50825 CCATGGGGAGCCAGGGAGAATTTCTGCACCTCCCACTGCTTCCTTTAAGTTGTCATCCTCCTCCACTGCTGCAGTCTGGAGGTTCTCCCTGGAGGCTGTATTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAACCTTAATAGCAACACTCTGGAAATGCGCCCAGTAGCAGCTACTGCAGTGTTCTTCATCTAACTGGATTTTT 50711 50925 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 NM_001304840.1,NM_020760.2|HECW2|cage_peaks_associated=hg_33019.1,hg_33020.1,hg_33021.1,hg_33034.1,hg_33035.1,hg_33036.1,hg_33037.1,hg_33038.1,hg_33039.1,hg_33040.1&cage_peaks_expressed=adopose,brain,heart,kidney,liver,retina,small_intestine,stomach&coord=chr2:196199249:196592611:- + 379462 379476 ACTATTAACATTGGCTCCACAAAGAATAAAAGTACATTCGGAGGGAAAAAATTAAAAGAACTTAATTGCATGACAGTATAGTTATATGAGAAGCAACTTCTTCATTGACAACATTGTCATCACCCTTAATGAAATGTGGGGCATTACTTAGGTGTAAAAAAAGATCTGTAAAATTGGTTCTGGCCTAAAGAGATTCTTTTATATTATCAAGTCCA 379362 379576 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 NM_014296.2|CAPN7|cage_peaks_associated=hg_35497.1,hg_35498.1&cage_peaks_expressed=B_cells,T_cells,adopose,basophils,brain,colon,heart,kidney,liver,neutrophils,retina,skeletal_muscle,small_intestine,stomach&coord=chr3:15206225:15252916:+ + 42058 42072 TAAATAAATAAATAAAAATAAAAAAATAAAAACACATTATAAAGGGGGCAATCCAGATGGCCAGTAAACCATTGTAATAGCCAGAAATTGGAAACATATATTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCCTGATATAACAATGGAAATAAATTACAGCTACACACAACATAATGGATAAGTCTTAAAAAGCCACATGTAC 41958 42172 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 NR_027112.2|LOC285692|cage_peaks_associated=hg_60882.1&cage_peaks_expressed=&coord=chr5:9641314:9903824:- + 144420 144434 CTGGATTCCACCCAAATTCTGTTTGGTGTATCTGGGAAGGGGGCCAGAAACTTTTTAACTGTACAAGCACCCTGGGTATAATGCACTGATCTGTTGATCTTTCATTGACAACATTGCCATCGACTTTGGAGCTGGAAAGGCCCTCAAAGAGTGTGCATCCTGACCTTTACATTTTATGAATGAGATGCTGGATTTCCAGAGTGTTGAGTGCAAAG 144320 144534 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 NM_001079653.1,NM_152744.3|SDK1|cage_peaks_associated=hg_77045.1,hg_77046.1,hg_77047.1,hg_77048.1,hg_77049.1,hg_77067.1,hg_77068.1&cage_peaks_expressed=B_cells,adopose,brain,colon,heart,kidney,retina,skeletal_muscle,small_intestine,stomach&coord=chr7:3301447:4269000:+ + 222594 222608 TCTGTACATTCTCCTTTGAGTCTGGATCCTTGATCCTGGCCTGTGATTCCATCTCAGGAGTTAGAAGCCTGTGGTGCCTGGCCTGAGTCAGCTCATTAGCTTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGAAGACATTTAAGCAAAGACCTGCAGGAAGGAAGGGAGTTAACTAAGTGGATATGTGGGGCAAGAACTTCCC 222494 222708 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 NM_001301128.1,NM_012301.3|MAGI2|cage_peaks_associated=hg_84504.1,hg_84505.1,hg_84506.1,hg_84507.1,hg_84508.1,hg_84509.1,hg_84510.1&cage_peaks_expressed=adopose,brain,colon,heart,kidney,liver,retina,skeletal_muscle,small_intestine,stomach&coord=chr7:78017056:79453574:- + 731473 731487 TACAATTTCCTAGATTAAACAATACATTCAAATGAGGTAATGAATTATGTGTTTTAAGAGCAGAATGAGCTATATTTGTTATAGAATATTATGTTAAATCTTCATTGACAACATTAAAGAGTCATACCTTTTATGGGTGTTAGTTAATTACGTATACTTATTTCCTTGGAACAAGATATATTTTACAAATAAAAAAGTTTTTCTATAATATTTTG 731373 731587 TTCATTGACAACATT TTCATTGACAACATT ||||||||||||||| =============== 15 0 0 0 NM_001135805.1,NM_001135806.1,NM_001291901.1,NM_005639.2,NR_031700.1|MIR1252,SYT1|cage_peaks_associated=,hg_127016.1,hg_127017.1,hg_127018.1,hg_127019.1,hg_127020.1,hg_127021.1,hg_127022.1,hg_127035.1,hg_127036.1,hg_127037.1,hg_127038.1&cage_peaks_expressed=,B_cells,brain,colon,kidney,retina,small_intestine,stomach&coord=chr12:78863992:79452008:+ - 243522 243536 TAGATGAATACAAAAGTATAAAATATATACCAACAAGGTATTTCCAATAATACATTAATGTATTGATGACATAAGATAGGTTTGTTCCAGAAGTTTAAAAAATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAGTATTACCGTTAAAACCAAAATATAGCATACTTATTCTCTCCATTATTTTGGAATAAGAAAAAATTATTCT 243422 243636 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 NR_040249.1|CYP2G1P|cage_peaks_associated=&cage_peaks_expressed=&coord=chr19:40890825:40900508:+ - 1462 1476 GAAATGACTGCAATGCACTCCCTATATGCCAGGTTCTTTGGTAAGTAGTCCACATGACTTACTGTATTGACTCCCTTAGGAGAGCTGTTAACATTATACTAATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTTGAGGCGGGCAGATCACCTGAAGTCAGGAGTTTGATACCAG 1362 1576 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 NM_002897.4,NM_016836.3,NR_039946.1|MIR4785,RBMS1|cage_peaks_associated=hg_31488.1,hg_31489.1,hg_31490.1,hg_31491.1,hg_31492.1,hg_31495.1,hg_31496.1,hg_31497.1&cage_peaks_expressed=B_cells,T_cells,adopose,basophils,brain,colon,heart,kidney,liver,neutrophils,retina,skeletal_muscle,small_intestine,stomach&coord=chr2:160272150:160493807:- - 127190 127204 CATCACTTTAGGAATAAGAACTCAATTCTGCCCTTTCAGAGTGTTCTGAAGGGATGTGTGCATGTGCATAAAGTTCCAAAGTAAATTTGCATTATATGCTAATGTTGTCAATGAATAGAATATAAATGTGCTTCTTTGCTGCAATTACACTAACTCACTAAGTAAGAAAGCACTAATTTTAAAACAAGGAGCCAGAAGCACTGTATAGTGCAAAG 127090 127304 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 NM_001080448.2,NM_001278300.1,NM_001278301.1,NM_173655.3|EPHA6|cage_peaks_associated=hg_228825.1,hg_37502.1,hg_37503.1,hg_37504.1,hg_37505.1,hg_37506.1,hg_37507.1,hg_37508.1&cage_peaks_expressed=,brain,colon,retina,small_intestine,stomach&coord=chr3:96814580:97748942:+ - 545898 545912 ACTCCACTATCTTTACAGAATTCTCTGTATAATGATATTTGGTATTTTATTTCAGATTTGATGAAAACATAATTTGAATATTAATTTTAAAATTTATTCAAATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTATATTGTTTAAAATTTTGTGGTCAGGATAAATTTTATTCCTTTCTTTTTCTTTAATTTTGTGTCTGGTTTG 545798 546012 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 NM_152688.3|KHDRBS2|cage_peaks_associated=hg_74196.1,hg_74197.1,hg_74198.1,hg_74199.1,hg_74200.1&cage_peaks_expressed=B_cells,basophils,brain,colon,kidney,retina,skeletal_muscle,small_intestine,stomach&coord=chr6:61679959:62286227:- - 287903 287917 GAAAATCTCATTTTGCTAGAGGGAATCAAATGTCTTCCAGACACCTTTGACTGAATTTTTCAGGAGTGTAAGAAATAGCAACTTATTATAGTATGAGTAAAATGTTGTCAATGAAGTATGATTACAAGATGGTTGATTGAAATAGTTGTTCAGTGAATTAATTCAATTTCTTCTCACTCTTTAAAATTGCCTTAATTAAACTGCATTAAAGATTT 287803 288017 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0 NM_133468.4|BMPER|cage_peaks_associated=hg_78082.1,hg_78083.1,hg_78084.1,hg_78085.1,hg_78086.1&cage_peaks_expressed=stomach&coord=chr7:33904910:34155872:+ - 214039 214053 TTCTGCCAGCAGATCACCATCATGAAATGCAGCGTCACCTCTTGCCTGGGTCTCTAGCCTGCCAGGCTACTCTACAGATTTTGGATTTACCAGCCCCCACAATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTCACTGTCTCTCTCTCTCTCTCTCACACACACACACACACACACACGCACTCGATACGATGACACATATACA 213939 214153 AATGTTGTCAATGAA AATGTTGTCAATGAA ||||||||||||||| =============== 15 0 0 0