GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-22 03:43:26, GGGenome : Schistosoma mansoni genome, ASM23792v2 (Apr, 2012)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

1 dna:chromosome chromosome:ASM23792v2:1:1:65476681:1
position: 17027244-17027258
AAGTTTATTAGGCTCATAATTCACAAAGCG17027244TTCATTGACAACATTTAAAATACAGTGCCTCTATAATGCAACTGA
4 dna:chromosome chromosome:ASM23792v2:4:1:32115376:1
position: 21725387-21725401
AGAAGAAGAAATTGAAAGTGAAGAATTCAA21725387TTCATTGACAACATTTCAATCATGTAATACTGAAAAGAATTTAAA
Chr_1.unplaced.SC_0135 dna:supercontig supercontig:ASM23792v2:Chr_1.unplaced.SC_0135:1:857621:1
position: 388970-388984
TCACGAAACTTAAACTACCTACTTGTCACA388970TTCATTGACAACATTCAGCTGAATGGTAATTTAACCGTTTTTTAC
Chr_5.unplaced.SC_0198 dna:supercontig supercontig:ASM23792v2:Chr_5.unplaced.SC_0198:1:459784:1
position: 174516-174530
GTATAATAATAATAATAATCTGAAAAAGAA174516AATGTTGTCAATGAATGCTTACACAACTAATGGTTGACTTTTAAA
SC_0013 dna:supercontig supercontig:ASM23792v2:SC_0013:1:3605463:1
position: 3455704-3455718
AATTTAGACGAAAGTTCTTATATTTAACTC3455704AATGTTGTCAATGAATAAAAAGAAATTGTCATCATTACTTGGCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ASM23792v2/TTCATTGACAACATT
lang : ja | db : ASM23792v2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.077 | 0.069 | search_plus_done; http://172.18.8.76:28158/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.082 | 0.005 | search_minus_done; http://172.18.8.76:28158/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.083 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).