GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-22 00:19:19, GGGenome : Oryza longistaminata genome, v0117-2013Aug (Aug, 2013)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

OlongScf3491 dna:scaffold scaffold:v0117-2013Aug:OlongScf3491:1:63857:1
position: 29402-29416
TAATCCCAATAGTTGTTTATTTTTGGACTC29402TTCATTGACAACATTGCCACTTTGATGACTGTTCTGACATGAATG
OlongScf3994 dna:scaffold scaffold:v0117-2013Aug:OlongScf3994:1:70773:1
position: 11710-11724
CTTTCAAATGATGGTCAAACTAATTATAAA11710TTCATTGACAACATTAACTAAACGAGTGAAGAGTGAAGAGAAGAT
OlongScf1617 dna:scaffold scaffold:v0117-2013Aug:OlongScf1617:1:153891:1
position: 91150-91164
TCCTGATGTCCGACGTGTGGGTAAGACCTG91150TTCATTGACAACATTCTCTTGTGTTTGTACCGATTCATGGCTTGC
OlongScf2216 dna:scaffold scaffold:v0117-2013Aug:OlongScf2216:1:178245:1
position: 138507-138521
AGATCTATCTAATTTAGGTGTAGTGTTCTC138507TTCATTGACAACATTTTTCACTTCCTGCGTTAGGTTTCCATTATC
OlongScf1808 dna:scaffold scaffold:v0117-2013Aug:OlongScf1808:1:42182:1
position: 15986-16000
CCTCCATAAGCAATGCCTCTTTTCCCTATC15986AATGTTGTCAATGAATGTTTTAGGCAGCTGCAAAGTGCACATGTA
OlongScf1692 dna:scaffold scaffold:v0117-2013Aug:OlongScf1692:1:46703:1
position: 13109-13123
CAGAAAGATGTTGCCAAGGTCCTTCAACAA13109AATGTTGTCAATGAACAGCCGATTGGTGCATCCAGGAGGCACAGG
OlongScf12360 dna:scaffold scaffold:v0117-2013Aug:OlongScf12360:1:56690:1
position: 15338-15352
TCTTGCATAATTTACCTGAGTGAAACGGAA15338AATGTTGTCAATGAACAAAAGCACATCTTGTCCTTCGGCATCACG
OlongScf2436 dna:scaffold scaffold:v0117-2013Aug:OlongScf2436:1:79615:1
position: 63430-63444
TATGATTGAGCACCCCTACCTACTTTGCAA63430AATGTTGTCAATGAACTGTTTGTTCGCTACATAAATGTTCAATGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/Orylo_v0117/TTCATTGACAACATT
lang : ja | db : Orylo_v0117 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.75:28185/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.007 | search_minus_done; http://172.18.8.75:28185/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.092 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).