GGGenome | Results

Help | Japanese

2025-04-08 11:16:11, GGGenome : Rabbit pre-spliced RNA, RefSeq on UM_NZW_1.0chr, D3G 23.02 (Feb, 2023)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

XM_051850472.1|LOC100357836;100357836|chr8:9636919:10046910:-|prespliced::chr8:9636919-10046910(-)
position: 2812-2826

TCATTAGCATAATAGGTTTCAGAAAAGGTT2812TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_008260152.3|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850465.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850466.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850468.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850469.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850470.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850471.1|LOC100357836;100357836|chr8:9699885:10068464:-|prespliced::chr8:9699885-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850473.1|LOC100357836;100357836|chr8:9699885:10068464:-|prespliced::chr8:9699885-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_002713403.4|LOC100008708;100008708|chr9:92029629:92032404:+|prespliced::chr9:92029629-92032404(+)
position: 30-44

GAATGCTACACTCCAAATACTATTGTGTT30TTCATTGACAACATTCACTATTACATATGCATATGAACACCAGTC

XM_051847092.1|C1H9orf153;100342003|chr1:86246548:86253126:-|prespliced::chr1:86246548-86253126(-)
position: 5810-5824

AGAAACACATTGGGAATCTTGGAAGTGGAA5810AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_008257491.3|C1H9orf153;100342003|chr1:86246548:86273702:-|prespliced::chr1:86246548-86273702(-)
position: 26386-26400

AGAAACACATTGGGAATCTTGGAAGTGGAA26386AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_051847101.1|C1H9orf153;100342003|chr1:86246548:86273702:-|prespliced::chr1:86246548-86273702(-)
position: 26386-26400

AGAAACACATTGGGAATCTTGGAAGTGGAA26386AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_008257487.3|C1H9orf153;100342003|chr1:86246548:86276381:-|prespliced::chr1:86246548-86276381(-)
position: 29065-29079

AGAAACACATTGGGAATCTTGGAAGTGGAA29065AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_051847112.1|C1H9orf153;100342003|chr1:86246548:86276382:-|prespliced::chr1:86246548-86276382(-)
position: 29066-29080

AGAAACACATTGGGAATCTTGGAAGTGGAA29066AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_008257472.3|C1H9orf153;100342003|chr1:86246548:86287979:-|prespliced::chr1:86246548-86287979(-)
position: 40663-40677

AGAAACACATTGGGAATCTTGGAAGTGGAA40663AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_051854304.1|LOC100340498;100340498|chr12:28690181:28936512:+|prespliced::chr12:28690181-28936512(+)
position: 174126-174140

CTGTAAAAATGGCTTGAAGATTGTTTAGTC174126AATGTTGTCAATGAAAAAAAAATGGCTTCTGTAATCAAGCTTAAT

XM_017349189.2|LOC100356654;100356654|chr19:38697358:38714878:+|prespliced::chr19:38697358-38714878(+)
position: 5247-5261

TCTCCTTTATCTTTTACAAGTTTATAGTAA5247AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT

XM_051825651.1|LOC100356654;100356654|chr19:38697358:38714878:+|prespliced::chr19:38697358-38714878(+)
position: 5247-5261

TCTCCTTTATCTTTTACAAGTTTATAGTAA5247AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/UM_NZW_1.0chr_RefSeq_prespliced_d3g2302/TTCATTGACAACATT
lang : en | db : UM_NZW_1.0chr_RefSeq_prespliced_d3g2302 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.78:28954/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.092 | 0.012 | search_minus_done; http://172.18.8.78:28954/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=40
0.099 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).