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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-04 07:42:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-099O11, 5' end sequence.
DK493760.1:790-809
GAAAACCGACAACAGAAGATCCTGAAACAG790AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATAT
BNARO5GH_T3_011_A08_30NOV2006_064 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES906193.1:771-790
GAAAACCGACAACAGAAGATCCTGAAACAG771AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
BNARO5GH_T3_015_C02_30NOV2006_012 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES906572.1:438-457
GAAAACCGACAACAGAAGATCCTGAAACAG438AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
BNARO6GH_T3_019_D12_07DEC2006_090 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES910478.1:749-768
GAAAACCGACAACAGAAGATCCTGAAACAG749AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
0121225 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115913.1:836-855
GANNACCGACANCAGAAGATCCCTGAACAG836AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
0098051 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV196898.1:169-188
GAAAACCGACAACAGAAGATCCTGAAACAG169AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
0171710 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV204303.1:577-596
GAAAACCGACAACAGAAGATCCTGAAACAG577AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
BR044482 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-064D03 5', mRNA sequence.
EX059838.1:211-230
GAAAACCGACAACAGAAGATCCTGAAACAG211AGAGCAGGTTACCAGTCACGTCAAGCCTAGACATATATGTCCCAAGAGAT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_4880.
FX692708.1:806-825
GAAAACCGACAACAGAAGATCCTGAAACAG806AGAGCAGGTTACCAGTCACGTCAAGCCTAGACATATATGTCCCAAGAGAT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_20218.
FX727752.1:784-803
GAAAACCGACAACAGAAGATCCTGAAACAG784AGAGCAGGTTACCAGTCACGTCAAGCCTAGACATATATGTCCCAAGAGAT
KBrB069N06R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB069N06, genomic survey sequence.
DX062840.1:649-668
GAAAACCGACAACAGAAGATCCTGAAACAG649AGAGCAGGTTACCAGTCACGTCAAGCCTAGACATATATGTCCCAAGAGAT
Brassica napus lipoxygenase 1 mRNA, complete cds.
AY162142.1:728-747
GAAAACCGACAACAGAAGATCCTGAAACAG728AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:31580064-31580083
GAAAACCGACAACAGAAGATCCTGAAACAG31580064AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:18303852-18303871
GAAAACCGACAACAGAAGATCCTGAAACAG18303852AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:29772860-29772879
GAAAACCGACAACAGAAGATCCTGAAACAG29772860AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
Brassica rapa genome, scaffold: A01.
LR031571.1:23549116-23549135
GAAAACCGACAACAGAAGATCCTGAAACAG23549116AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:29406915-29406934
GAAAACCGACAACAGAAGATCCTGAAACAG29406915AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:24076804-24076823
GAAAACCGACAACAGAAGATCCTGAAACAG24076804AGAGCAGGTTACCAGTCACGTCGAGCCTAGACATATATGTTCCAAGAGAT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3289.
FX658064.1:2012-2031
ATCTCTTGGAACATATATATCTAGGCTTGA2012CGTGACTGGTAACCTGCTCTCTGTTTCAGGATCTTCTTTAGTCGGTTTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_35794.
FX728748.1:1092-1111
ATCTCTTGGAACATATATATCTAGGCTCGA1092CGTGACTGGTAACCTGCTCTCTGTTTCAGGATCTTCTTGAGTCGGTTTTC
TSA: Raphanus sativus RS25851 mRNA sequence.
JT810398.1:1987-2006
ATCTCTTGGAACATATATATCTAGGCTCGA1987CGTGACTGGTAACCTGCTCTCTGTTTCAGGATCTTCTTTAGTCGGTTTTC
KBrH034H02F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH034H02, genomic survey sequence.
DX901611.1:561-580
ATCTCTTGGGACATATATGTCTAGGCTTGA561CGTGACTGGTAACCTGCTCTCTGTTTCAGGATCTTCTGTTGTCGGTTTTC
BOT01-37D8TF BOT01 Brassica oleracea genomic clone BOT01-37D8, genomic survey sequence.
FI700666.1:535-554
ATCTCTTGGAACATATATGTCTAGGCTCGA535CGTGACTGGTAACCTGCTCTCTGTTTCAGGATCTTCTGTTGTCGGTTTTC
BOT01-85M23TR BOT01 Brassica oleracea genomic clone BOT01-85M23, genomic survey sequence.
FI738467.1:501-520
ATCTCTTGGAACATATATGTCTAGGCTCGA501CGTGACTGGTAACCTGCTCTCTGTTTCAGGATCTTCTGTTGTCGGTTTTC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:20764799-20764818
ATCTCTTGGAACATATATGTCTAGGCTCGA20764799CGTGACTGGTAACCTGCTCTCTGTTTCAGGATCTTCTGTTGTCGGTTTTC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:9700135-9700154
ATCTCTTGGAACATATATATCTAGGCTCGA9700135CGTGACTGGTAACCTGCTCTCTGTTTCAGGATCTTCTTTAGTCGGTTTTC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:9700135-9700154
ATCTCTTGGAACATATATATCTAGGCTCGA9700135CGTGACTGGTAACCTGCTCTCTGTTTCAGGATCTTCTTTAGTCGGTTTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGAGCAGGTTACCAGTCACG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAGCAGGTTACCAGTCACG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.907 | 0.898 | search_plus_done; http://172.18.8.135:50400/match?q=AGAGCAGGTTACCAGTCACG&k=0&no_gap=0&offset=0&limit=50
1.118 | 0.211 | search_minus_done; http://172.18.8.135:50400/match?q=CGTGACTGGTAACCTGCTCT&k=0&no_gap=0&offset=0&limit=32
1.124 | 0.006 | cgi_end;

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