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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 00:36:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BR046532 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-104B05 5', mRNA sequence.
EX061888.1:213-232
AAGCCAAAGCACGCCTTCATGAGGCACTCT213CGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGA
BR085997 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-021E11 5', mRNA sequence.
EX099707.1:651-670
AAGCCAAAGCACGCCTTCATGAGGCACTCT651CGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGA
RR3BW85TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX762864.1:572-591
AAGCGAAAGCACGGCTTCACGAAGCGCTTT572CGCAGATGTGGCAACTAGAAGCTGCCGCAAGAGCTGCGATAGAGAACGGA
RR4D502TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY921510.1:180-199
AAGCGAAAGCACGGCTTCACGAAGCGCTTT180CGCAGATGTGGCAACTAGAAGCTGCCGCAAGAGCTGCGATAGAGAACGGA
RS1D330TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY929774.1:422-441
AAGCGAAAGCACGGCTTCATGAAGCGCTTT422CGCAGATGTGGCAACTAGAAGCTGCCTCTAGAGCTGCGATAGAGAACGGA
RS2EH47TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY941369.1:265-284
AAGCGAAAGCACGGCTTCACGAAGCGCTTT265CGCAGATGTGGCAACTAGAAGCTGCCTCGAGAACTGCGATTGAGAATGGA
CAP019E18.F CAP Capsella rubella genomic 5', genomic survey sequence.
KG049608.1:363-382
AAGCAAAAGCACGACTTCATGAAGCGCTTT363CGCAGATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAATAGAGAACGGA
Brassica napus cry1 gene for cryptochrome 1.
AJ344565.1:2859-2878
AAGCCAAAGCACGCCTTCATGAGGCACTCT2859CGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGA
Brassica napus mRNA for cryptochrome1 (cry1 gene).
AJ704628.1:1515-1534
AAGCCAAAGCACGCCTTCATGAGGCACTCT1515CGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGA
Capsella bursa-pastoris isolate WGS_leaf chromosome 6.
CP144188.1:21594326-21594345
AAGCAAAAGCACGGCTTCATGAAGCGCTTT21594326CGCAGATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAATAGAGAACGGA
Brassica rapa cryptochrome 1 protein (cry1) mRNA, complete cds.
DQ859033.1:1550-1569
AAGCAAAAGCACGCCTTCATGAGGCCCTCT1550CGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGA
Capsella bursa-pastoris isolate US721 clone L2 cryptochrome 1 (CRY1) mRNA, partial cds.
GQ251563.1:1475-1494
AAGCAAAAGCACGACTTCATGAAGCGCTTT1475CGCAGATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAATAGAGAACGGA
Capsella bursa-pastoris isolate US740 clone L2 cryptochrome 1 (CRY1) mRNA, partial cds.
GQ251564.1:1475-1494
AAGCAAAAGCACGACTTCATGAAGCGCTTT1475CGCAGATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAATAGAGAACGGA
Brassica rapa subsp. pekinensis cultivar Chiifu cryptochrome 1 (CRY1) mRNA, complete cds.
MG432487.1:1460-1479
AAGCCAAAGCACGCCTTCATGAGGCACTCT1460CGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGA
RR3BW85JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX767040.1:821-840
TCCGTTCTCTATCGCAGCTCTTGCGGCAGC821TTCTAGTTGCCACATCTGCGAAGCGCTTCGTGAAGCCGTGCTTT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6094.
FX693791.1:838-857
TCCGTTCTCTATTGCAGCTCTTGAGGCAGC838TTCTAGTTGCCACATCTGCGAGAGTGCCTCATGAAGGCGTGCTTTGGCTT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:20461273-20461292
TCCGTTCTCTATTGCAGCTCTTGAGGCAGC20461273TTCTAGTTGCCACATCTGCGAGAGTGCCTCATGAAGGCGTGCTTTGGCTT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:19860111-19860130
TCCGTTCTCTATTGCAGCTCTTGAGGCAGC19860111TTCTAGTTGCCACATCTGCGAGAGTGCCTCATGAAGGCGTGCTTTGGCTT
Thlaspi arvense genome assembly, chromosome: 6.
OU466862.2:44498179-44498198
TCCATTCTCTACTGCAGCTCTTGAAGCAGC44498179TTCTAGTTGCCACATCTGCGAAAGAGCTTCATGAAGCCGTGATTTAGCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGCAGATGTGGCAACTAGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCAGATGTGGCAACTAGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.587 | 0.578 | search_plus_done; http://172.18.8.135:50400/match?q=CGCAGATGTGGCAACTAGAA&k=0&no_gap=0&offset=0&limit=50
0.677 | 0.091 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTAGTTGCCACATCTGCG&k=0&no_gap=0&offset=0&limit=36
0.681 | 0.003 | cgi_end;

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