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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 12:54:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrB131D06F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB131D06, genomic survey sequence.
ED537836.1:781-800
AATAATTTATTAACAGAAGCTTCATTGAGG781AAAAAAGGAGACCTGTCCTGGCATAACTTCACCATTAGTACCACTGATGT
Asterias rubens genome assembly, chromosome: 9.
LR699100.1:11376153-11376172
GAGATCATTTAAAATAACCCTTTTTCAAAA11376153AAAAAAGGAGACCTGTCCTGTAAAAAGGAAGCGGGCGGGCAGGGACGCTA
ia74h03.b1 WGS-ZmaysF (JM107 adapted methyl filtered) Zea mays genomic clone ia74h03 5', genomic survey sequence.
BZ316660.1:523-542
AACTATGAATGTGTGACCAAAGAAATTATA523CAGGACAGGTCTCCTTTTTTGACAGCTAAATTTAGTTCTCCTTTTTTACA
Brassica napus gln gene for plastid glutamine synthetase, exons 1-12.
AJ271909.1:3343-3362
ACATCAGTGGTACTAATGGTGAAGTTATGC3343CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:13409238-13409257
ACATCAGTGGTACTAATGGTGAAGTTATGC13409238CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica napus genome assembly, chromosome: A04.
HG994358.1:7783099-7783118
ACATCAGTGGTACTAATGGTGAAGTTATGC7783099CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica rapa genome, scaffold: A04.
LR031576.1:7060009-7060028
ACATCAGTGGTACTAATGGTGAAGTTATGC7060009CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:7303726-7303745
ACATCAGTGGTACTAATGGTGAAGTTATGC7303726CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAAAAGGAGACCTGTCCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAAAAGGAGACCTGTCCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.387 | 0.378 | search_plus_done; http://172.18.8.135:50400/match?q=AAAAAAGGAGACCTGTCCTG&k=0&no_gap=0&offset=0&limit=50
0.493 | 0.106 | search_minus_done; http://172.18.8.135:50400/match?q=CAGGACAGGTCTCCTTTTTT&k=0&no_gap=0&offset=0&limit=48
0.498 | 0.004 | cgi_end;

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