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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:06:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrB099D02F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB099D02, genomic survey sequence.
ED514725.1:640-659
CGTATCGAATCAATCGTAAAATGAAAACTA640AAACTAAACCGAGTCAATGGTTAATTAAAGTTTTCTCATACCAATTAATG
KBrB100D02F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB100D02, genomic survey sequence.
ED515460.1:638-657
CGTACCGAATCAATCGTAAAATGAAAACTA638AAACTAAACCGAGTCAATGGTTAATTAAAGTTTTCTCATACCAATTAATG
Brassica rapa subsp. pekinensis clone KBrH043I21, complete sequence.
FP340640.1:116442-116461
CGTACCGAATCAATCGTAAAATGAAAACTA116442AAACTAAACCGAGTCAATGGTTAATTAAAGTTTTCTCATACCAATTAATG
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:27381758-27381777
CGTACCGAATCAATCGTAAAATGAAAACTA27381758AAACTAAACCGAGTCAATGGTTGATTAAAGTTTTCTCATACCAAGGAAAT
Brassica napus genome assembly, chromosome: A08.
HG994362.1:2850813-2850832
ATTTCCTTGGTATGAGAAAACTTTAATCAA2850813CCATTGACTCGGTTTAGTTTTAGTTTTCATTTTACGATTGATTCGGTACG
Brassica rapa genome, scaffold: A08.
LR031575.1:2879407-2879426
ATTTCCTTGGTATGAGAAAACTTTAATCAA2879407CCATTGACTCGGTTTAGTTTTAGTTTTCATTTTACGATTGATTCGGTACG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:3835207-3835226
CATTAATTGGTATGAGAAAACTTTAATTAA3835207CCATTGACTCGGTTTAGTTTTAGTTTTCATTTTACGATTGATTCGGTACG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:2894991-2895010
ATTTCCTTGGTATGAGAAAACTTTAATCAA2894991CCATTGACTCGGTTTAGTTTTAGTTTTCATTTTACGATTGATTCGGTACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAACTAAACCGAGTCAATGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACTAAACCGAGTCAATGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.205 | 0.196 | search_plus_done; http://172.18.8.135:50400/match?q=AAACTAAACCGAGTCAATGG&k=0&no_gap=0&offset=0&limit=50
0.312 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=CCATTGACTCGGTTTAGTTT&k=0&no_gap=0&offset=0&limit=46
0.315 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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