GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:49:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KR 1020230095709-A/8: Kompetitive Allele Specific PCR (KASP) marker set for seed purity check of Chinese cabbage(Brassica rapa spp. pekinensis) and methods for efficient marker development.
PE259861.1:382-403
CTCAGCAAAGTCAGCACGCAGTACTACTTC382AAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGA
EST3472 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B153D051, mRNA sequence.
EL625966.1:441-462
CTCAGCAAAGTCAGCACGCAGTACTACTTC441AAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGA
RR1E182TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY900065.1:239-260
CTCAGCAAAGTGAGCACGCAGTACTACTTC239AAAGACGAGCAGATGATACAGCCTTCCCAAGCTCAGGTTTACGTTGGTTTGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_80641.
FX784657.1:234-255
CTCAGCAAAGTGAGCACGCAGTACTACTTC234AAAGACGAGCAGATGATACAGCCTTCCCAAGCTCAGGTTTACGTTGGTTTGA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:55833491-55833512
CTCAGCAAAGTCAGCACGCAGTACTACTTC55833491AAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:29114192-29114213
CTCAGCAAAGTCAGCACGCAGTACTACTTC29114192AAAGACGAGCAGATGATACAGCCTTCCGAAGCTCAGGTTTACGTTGGTTTGA
Brassica rapa genome, scaffold: A07.
LR031574.1:27989345-27989366
CTCAGCAAAGTCAGCACGCAGTACTACTTC27989345AAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:46102090-46102111
CTCAGCAAAGTCAGCACGCAGTACTACTTC46102090AAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:28333006-28333027
CTCAGCAAAGTCAGCACGCAGTACTACTTC28333006AAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_16432.
FX664472.1:1306-1327
TCAAACCAACGTAAACCTGAGCTTGGGAAG1306GCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTCACTTTGCTGAG
BOMGX02TF BO_2_3_KB Brassica oleracea genomic clone BOMGX02, genomic survey sequence.
BH685660.1:55-76
TCAAACCAACGTAGACCTGAGCTTCAGAAG55GCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAG
KBrB034L08F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB034L08, genomic survey sequence.
DX036310.1:470-491
TCAAACCAACGTAGACCTGAGCTTCAGAAG470GCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAG
KBrB122F22F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB122F22, genomic survey sequence.
ED531274.1:492-513
TCAAACCAACGTAGACCTGAGCTTCAGAAG492GCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.
AC189312.2:479-500
TCAAACCAACGTAGACCTGAGCTTCAGAAG479GCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:276803-276824
TCAAACCAACGTAAACCTGAGCTTCGGAAG276803GCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAG
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:2603335-2603356
TCAAACCAACGTAAACCTGAGCTTGGGAAG2603335GCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTCACTTTGCTGAG
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:541235-541256
TCAAACCAACGTAAACCTGAGCTTGGGAAG541235GCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTCACTTTGCTGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAGACGAGCAGATGATACAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGACGAGCAGATGATACAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.434 | 0.425 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGACGAGCAGATGATACAGC&k=0&no_gap=0&offset=0&limit=50
0.542 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=GCTGTATCATCTGCTCGTCTTT&k=0&no_gap=0&offset=0&limit=41
0.547 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).