GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-06 10:57:06, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Populus tremuloides microsatellite PTR12.
AF240760.1:228-252
AGTAAGCGACACCAGAGGAAGCATTATAAC228AATAACCATCCCTCCAATAACCTACCATAAGAAATCAAAATCAGTACTTTTTATT
Salix babylonica isolate Saba01F chromosome 7Bb.
CP161357.1:12684444-12684468
AGTGAGCGACACCAGAGGAAGCATTATAAC12684444AATAACCATCCCTCCAATAACCTACCATAAGAGATCAAAATCAATAGTTTTTTAG
Salix babylonica isolate Saba01F chromosome 7Ba.
CP161395.1:12899885-12899909
AGTGAGCGACACCAGAGGAAGCATTATAAC12899885AATAACCATCCCTCCAATAACCTACCATAAGAGATCAAAATCAATAGTTTTTTAG
Salix herbacea genome assembly, chromosome: 6.
OZ286656.1:15015264-15015288
AGTGAGCGACACCAGAGGAAGCATTATAAC15015264AATAACCATCCCTCCAATAACCTACCATAAGAGATCAAAATCAATAGTTTTTCTG
Salix viminalis genome assembly, chromosome: 14.
OZ287321.1:11166716-11166740
AGTGAGCGACACCAGAGGAAGCATTATAAC11166716AATAACCATCCCTCCAATAACCTACCATAAGAGATCAAAATCAATAGTTTTTCTG
Salix viminalis genome assembly, chromosome: 14.
OZ287363.1:10519180-10519204
AGTGAGCGACACCAGAGGAAGCATTATAAC10519180AATAACCATCCCTCCAATAACCTACCATAAGAGATCAAAATCAATAGTTTTTCTG
Salix reticulata genome assembly, chromosome: 10.
OZ287381.1:12449515-12449539
AGTGAGCGACACCAGAGGAAGCATTATAAC12449515AATAACCATCCCTCCAATAACCTACCATAAGAGATCACAATCAATAGTTTTTTTG
P_tremula-Br11-PTR12_r.ab1 P_tremula-Br11 Populus tremula genomic clone P_tremula-Br11-PTR12, genomic survey sequence.
JS807662.1:190-214
AATAAAAAGTACTGATTTTGATTTCTTATG190GTAGGTTATTGGAGGGATGGTTATTG
Salix caprea genome assembly, chromosome: 14.
OZ037756.1:3028770-3028794
CAGAAAAACTATTGATTTTGATCTCTTATG3028770GTAGGTTATTGGAGGGATGGTTATTGTTATAATGCTTCCTCTGGTGTCGCTCACT
Populus tremula genome assembly, chromosome: 15.
OZ066596.1:4022396-4022420
AATAAAAAGTACTGATTTTGATTTCTTATG4022396GTAGGTTATTGGAGGGATGGTTATTGTTATAATGCTTCCTCTGGTGTCGCTTACT
Salix repens genome assembly, chromosome: 9.
OZ253385.1:3597756-3597780
CAAAAAACCTATTGATTGTGATCTCTTATG3597756GTAGGTTATTGGAGGGATGGTTATTGTTATAATGCTTCCTCTGGTGTCGCTCACT
Salix repens genome assembly, chromosome: 7.
OZ253402.1:4639220-4639244
CAAAAAAACTATTGATTTTGATCTCTTATG4639220GTAGGTTATTGGAGGGATGGTTATTGTTATAATGCTTCCTCTGGTGTCGCTCACT
Salix cinerea genome assembly, chromosome: 8.
OZ253424.1:3050028-3050052
CAAAAAAACTATTGATTGTGATCTCTTATG3050028GTAGGTTATTGGAGGGATGGTTATTGTTATAATGCTTCCTCTGGTGTCGCTCACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATAACCATCCCTCCAATAACCTAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATAACCATCCCTCCAATAACCTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.704 | 0.695 | search_plus_done; http://172.18.8.135:50900/match?q=AATAACCATCCCTCCAATAACCTAC&k=0&no_gap=0&offset=0&limit=50
1.097 | 0.392 | search_minus_done; http://172.18.8.135:50900/match?q=GTAGGTTATTGGAGGGATGGTTATT&k=0&no_gap=0&offset=0&limit=43
1.101 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).