GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:50:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

AFP0ABA10YF22RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO624756.1:601-627
CTAGCTAAACACTCAAGGAAGGTTGGTTTT601AATCGGTTTAGTTTTTTGTTTCCTCACTTGGATGATCCAAATTCAAGATGGATTAGG
AFP0ABA38YN03RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO632669.1:601-627
CTAGCTAAACACTCAAGGAAGGTTGGTTTT601AATCGGTTTAGTTTTTTGTTTCCTCACTTGGATGATCCAAATTCAAGATGGATTAGG
AFP0ABA56YC03FM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO648446.1:601-627
CTAGCTAAACACTCAAGGAAGGTTGGTTTT601AATCGGTTTAGTTTTTTGTTTCCTCACTTGGATGATCCAAATTCAAGATGGATTAGG
AFP0ABA72YD10RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO665584.1:597-623
ACCAGTAGCTAAACACTCAAGGAAGGTTTT597AATCGGTTTAGTTTTTTGTTTCCTCACTTGGATGATCCAAA
CGN-57588 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w18l5 5', mRNA sequence.
DV709318.1:189-215
CCCAATCCATCTTGAAATTGGATCATCCAA189GTGAGGAAACAAAAAACTAAACCGATTAAAACCTTCCTTGAGTGTTTAGCTAGTGGG
CGN-58857 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w27p11 5', mRNA sequence.
DV710341.1:189-215
CCCAATCCATCTTGAAATTGGATCATCCAA189GTGAGGAAACAAAAAACTAAACCGATTAAAACCTTCCTTGAGTGTTTAGCTAGTGGG
AFP0ABA27YE09RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO612128.1:623-649
ACCATTTCATCTTGAAATTGAATCATCCAA623GTGAGGAAACAAAAAACTAAACCGATTAAAACCTTCCTTGAGTGTTTAGCTAGTGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATCGGTTTAGTTTTTTGTTTCCTCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCGGTTTAGTTTTTTGTTTCCTCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.260 | 0.251 | search_plus_done; http://172.18.8.135:50400/match?q=AATCGGTTTAGTTTTTTGTTTCCTCAC&k=0&no_gap=0&offset=0&limit=50
0.494 | 0.234 | search_minus_done; http://172.18.8.135:50400/match?q=GTGAGGAAACAAAAAACTAAACCGATT&k=0&no_gap=0&offset=0&limit=46
0.496 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).