GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 15:25:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdfw2034i14.y1 Mdfw Malus domestica cDNA clone Mdfw2034i14 5' similar to TR:Q9XIF0 Q9XIF0 PUTATIVE DISEASE RESISTANCE PROTEIN, mRNA sequence.
CN582049.1:1-23
1AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Mdst6015a15.y1 Mdst Malus domestica cDNA clone Mdst6015a15 5' similar to TR:Q9ZSH2 Q9ZSH2 DISEASE RESISTANCE GENE HOMOLOG 1A, mRNA sequence.
CV658464.1:258-280
TCCCCACTAAAAGCCCTTCAAAATCTACCT258AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Mdst6018l20.y3 Mdst Malus domestica cDNA clone Mdst6018l20 5' similar to TR:Q9ZSH1 Q9ZSH1 DISEASE RESISTANCE GENE HOMOLOG 9N, mRNA sequence.
CV880518.1:258-280
TCCCCACTAAAAGCCCTTCAAAATCTACCT258AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40175242-40175264
TCCCCACTAAAAGCCCTTCAAAATCTACCT40175242AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29649477-29649499
TCCCCACTAAAAGCCCTTCAAAATCTACCT29649477AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29251600-29251622
TCCCCACTAAAAGCCCTTCAAAATCTACCT29251600AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25965222-25965244
TCCCCACTAAAAGCCCTTCAAAATCTACCT25965222AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29770803-29770825
TCCCCACTAAAAGCCCTTCAAAATCTACCT29770803AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26244477-26244499
TCCCCACTAAAAGCCCTTCAAAATCTACCT26244477AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
010619AEPA003853CR (AEPA) Pinkie expanding leaf Malus domestica cDNA clone AEPAA00385, mRNA sequence.
EE663811.1:584-606
TGCAGCTGCACACCATCATATGCATTGATA584TCCAAAGTTAGCTCCAACAGATTAGGTAGATTTTGAAGGGCTTTTAGTGGGGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATCTGTTGGAGCTAACTTTGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCTGTTGGAGCTAACTTTGGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.517 | 0.509 | search_plus_done; http://172.18.8.135:50400/match?q=AATCTGTTGGAGCTAACTTTGGA&k=0&no_gap=0&offset=0&limit=50
0.693 | 0.175 | search_minus_done; http://172.18.8.135:50400/match?q=TCCAAAGTTAGCTCCAACAGATT&k=0&no_gap=0&offset=0&limit=41
0.694 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).