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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:12:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrB034I14F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB034I14, genomic survey sequence.
DX036178.1:86-105
ACGATTCGTGGAGACACATCTTATAAAAGT86ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
KBrB044G13R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB044G13, genomic survey sequence.
DX043655.1:86-105
AAGATTCGTGGAGACACATCTTATAAAAGT86ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
KBrB046C16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB046C16, genomic survey sequence.
DX044999.1:86-105
AAGATTCGTGGAGACACATCTTATAAAAGT86ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
KBrB059J24R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB059J24, genomic survey sequence.
DX055160.1:86-105
AAGATTCGTGGAGACACATCTTATAAAAGT86ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
KBrB102M01F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB102M01, genomic survey sequence.
ED517327.1:103-122
AAGATTCGTGGAGACACATCTTATAAAAGT103ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 98 unordered pieces.
AC234734.2:997-1016
AAGATTCGTGGAGACACATCTTATAAAAGT997ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034I14, complete sequence.
AC189311.2:85-104
AAGATTCGTGGAGACACATCTTATAAAAGT85ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:3857736-3857755
AAGATTCGTGGAGACACATCTTATAAAAGT3857736ACAATGAGCTGTGTTGACGCAGGAAACATTGATTAGCCATGTGCTTTGAA
Pseudochaenichthys georgianus genome assembly, chromosome: 22.
LR792567.1:8285123-8285142
CACTTGCATATGACAAAACCAATTTGTCAT8285123GCGTCAACACAGCTCATTGTCTTTTCCTTAATAACCACACAGCTGTTAAT
KBrH094N11F Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH094N11, genomic survey sequence.
DU116464.1:226-245
CAAAGCACATGGTTCACATCAATGTTTCCT226GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 126 unordered pieces.
AC234733.2:64272-64291
CAAAGCACATGGTTCACATCAATGTTTCCT64272GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:25526069-25526088
TTCAAAGCACATGGCTAATCAATGTTTCCT25526069GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT
Brassica rapa genome, scaffold: A07.
LR031574.1:24432639-24432658
CAAAGCACATGGTTCACATCAATGTTTCCT24432639GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:41227899-41227918
CAAAGCACATGGTTCACATCAATGTTTCCT41227899GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTTCACGAATCTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:24770879-24770898
CAAAGCACATGGTTCACATCAATGTTTCCT24770879GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACAATGAGCTGTGTTGACGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAATGAGCTGTGTTGACGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.260 | 0.251 | search_plus_done; http://172.18.8.135:50400/match?q=ACAATGAGCTGTGTTGACGC&k=0&no_gap=0&offset=0&limit=50
0.398 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=GCGTCAACACAGCTCATTGT&k=0&no_gap=0&offset=0&limit=42
0.403 | 0.005 | cgi_end;

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