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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:53:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Epinephelus fuscoguttatus DNA, LG20, complete sequence.
AP022694.1:12298839-12298858
GTAGGTCCTAACTTTGATCACAAGACCGTG12298839ACAATGGCCATACTTGAACCTCTCTCACTGTGCGGCGTGGGAGAGCCCAA
GA__Ed0087F01r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0087F01r, mRNA sequence.
BQ414505.1:65-84
TTGAACTTTTAGTTAGTAACTAAACATAAA65ACAATGGCCATACTTGAACCTTGTATAGGAAGTTCAATTTTCCCCCACTC
GR__Eb0042N18.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0042N18 5', mRNA sequence.
CO110119.1:96-115
AGGCACTTTTAGTTAGTAACTACACATAAA96ACAATGGCCATACTTGAACCTTGTATAGGAAGTTCAACTTTCCCCCACTC
GH_HYPT_01-01-16R_D12_InvR_22Apr04_090_R Stem - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW226051.1:116-135
AGGCACTTTTAGTTAGTAACTACACATAAA116ACAATGGCCATACTTGAACCTTGTATAGGAAGTTCAACTTTCCCCCACTC
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:746577-746596
AGGCACTTTTAGTTAGTAACTACACATAAA746577ACAATGGCCATACTTGAACCTTGTATAGGAAGTTCAACTTTCCCCCACTC
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:703144-703163
AGGCACTTTTAGTTAGTAACTACACATAAA703144ACAATGGCCATACTTGAACCTTGTATAGGAAGTTCAACTTTCCCCCACTC
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:748783-748802
TTGAACTTTTAGTTAGTAACTAAACATAAA748783ACAATGGCCATACTTGAACCTTGTATAGGAAGTTCAATTTTCCCCCACTC
Cydalima perspectalis genome assembly, chromosome: 3.
OX596202.1:6036034-6036053
TCGCTTGTTGAATAAAGAGTGCTTCGCCCA6036034ACAATGGCCATACTTGAACCGTTAGCTTTCGTGTAAAGAGGTGGTTATGA
Epinephelus fuscoguttatus DNA, LG23, complete sequence.
AP022697.1:31950198-31950217
GATGGTGGGCCTAAGTCGCACAGTGAGAGA31950198GGTTCAAGTATGGCCATTGTCACGCTCTTGCGATCAAAGACAGCCTGGGA
GA__Eb0007F01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0007F01f, mRNA sequence.
BF270201.2:312-331
GAGTGGGGGAAAATTGAACTTCCTATACAA312GGTTCAAGTATGGCCATTGTTTTATGTTTAGTTACTAACTAAAAGTTCAA
GR__Ea49I10.r GR__Ea Gossypium raimondii cDNA clone GR__Ea49I10 3', mRNA sequence.
CO084098.1:759-778
GAGTGGGGGAAAGTTGAACTTCCTATACAA759GGTTCAAGTATGGCCATTGTTTTATGTGTAGTTACTAACTNAAAGTGCCT
GR__Eb0042N18.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0042N18 3', mRNA sequence.
CO110120.1:459-478
GAGTGGGGGAAAGTTGAACTTCCTATACAA459GGTTCAAGTATGGCCATTGTTTTATGTGTAGTTACTAACTAAAAGTGCCT
GH_TMIRS_076_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW503659.1:718-737
GAGTGGGGGAAAGTTGAACTTCCTATACAA718GGTTCAAGTATGGCCATTGTTTTATGTGTAGTTACTAACTA
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:94112676-94112695
GAGTGGGGGAAAATTGAACTTCCTATACAA94112676GGTTCAAGTATGGCCATTGTTTTATGTTTAGTTACTAACTAAAAGTTCAA
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:107241527-107241546
GAGTGGGGGAAAGTTGAACTTCCTATACAA107241527GGTTCAAGTATGGCCATTGTTTTATGTGTAGTTACTAACTAAAAGTGCCT
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:138818775-138818794
GTGTGGGGGAAAGTTGAACTTCCTATACAA138818775GGTTCAAGTATGGCCATTGTTTTATGTGTAGTTACTAACTAAAAGTGCCT
Oxycera nigricornis genome assembly, chromosome: 3.
OZ012661.1:68113572-68113591
GAGCATCCATTGGCTTTCATTTCTGTGTAT68113572GGTTCAAGTATGGCCATTGTACATCATATACAACTGAAGTAACGAATTGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACAATGGCCATACTTGAACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAATGGCCATACTTGAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.279 | 0.270 | search_plus_done; http://172.18.8.135:50400/match?q=ACAATGGCCATACTTGAACC&k=0&no_gap=0&offset=0&limit=50
0.503 | 0.224 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTCAAGTATGGCCATTGT&k=0&no_gap=0&offset=0&limit=42
0.509 | 0.006 | cgi_end;

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