GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:59:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Trifolium pratense cDNA clone:RCC05991.
BB933498.1:72-91
GATGCAACCTGGAGGACCTGGCATGGCTCC72ACACACAATCCCCCAACAATACCAACAACAACAACAACAACAACCCTACA
Trifolium pratense cDNA clone:RCC09516.
BB936561.1:98-117
GATGCAACCTGGAGGACCTGGCATGGCTCC98ACACACAATCCCCCAACAATACCAACAACAACAACAACAACAACAACCCT
Trifolium pratense cDNA clone:RCC12319.
BB938973.1:68-87
GATGCGACCTGGAGGACCTGGCATGGCTCC68ACACACAATCCCCCAACAATACCAACAACAACAACAACAACAACCCTACA
Trifolium pratense mRNA for putative DNA binding protein, complete cds.
AB234881.1:92-111
GATGCAACCTGGAGGACCTGGCATGGCTCC92ACACACAATCCCCCAACAATACCAACAACAACAACAACAACAACCCTACA
Oxystoma pomonae genome assembly, chromosome: 3.
OY998165.1:125795142-125795161
AGTTTTCTGATCTTTTTGCTCTTCTTTTAC125795142ACACACAATCCCCCAACAATGCTGCCGTATTCACTATATTATGATTATCG
Mus musculus BAC clone RP24-206N14 from 9, complete sequence.
AC125100.4:50373-50392
TAGCCTTTTATCTAATTATTTCATTTGAAA50373ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OW971566.1:113419749-113419768
TAGCCTTTTATCTAATTATTTCATTTGAAA113419749ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OW971583.1:113264409-113264428
TAGCCTTTTATCTAATTATTTCATTTGAAA113264409ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OW971604.1:113227503-113227522
TAGCCTTTTATCTAATTATTTCATTTGAAA113227503ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus domesticus genome assembly, chromosome: 9.
OW971630.1:112656468-112656487
TAGCCTTTTATCTAATTATTTCATTTGAAA112656468ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OW971646.1:113304299-113304318
TAGCCTTTTATCTAATTATTTCATTTGAAA113304299ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus molossinus genome assembly, chromosome: 9.
OW971668.1:113428467-113428486
TAGCCTTTTATCTAGTTATTTCATTTGAAA113428467ATTGTTGGGGGATTGTGTGTGTGTGCCTGTTGCCCAGAGTTGCCTCAAAC
Mus spretus genome assembly, chromosome: 9.
OW971688.1:115042448-115042467
TAGCCTTTTATCTAGTTATTTCATTTGAAA115042448ATTGTTGGGGGATTGTGTGTGTGTGCTTGGACACAGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OW971717.1:113430211-113430230
TAGCCTTTTATCTAATTATTTCATTTGAAA113430211ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OW971730.1:113577479-113577498
TAGCCTTTTATCTAATTATTTCATTTGAAA113577479ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OW971751.1:112766776-112766795
TAGCCTTTTATCTAATTATTTCATTTGAAA112766776ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus musculus genome assembly, chromosome: 9.
OW971772.1:113376521-113376540
TAGCCTTTTATCTAGTTATTTCATTTGAAA113376521ATTGTTGGGGGATTGTGTGTGTGTGCCTGTTGCCCAGAGTTGCCTCAAAC
Mus musculus genome assembly, chromosome: 9.
OW971793.1:113176667-113176686
TAGCCTTTTATCTAATTATTTCATTTGAAA113176667ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OW971814.1:113598505-113598524
TAGCCTTTTATCTAATTATTTCATTTGAAA113598505ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus castaneus genome assembly, chromosome: 9.
OW971843.1:113204096-113204115
TAGCCTTTTATCTAATTATTTCATTTGAAA113204096ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OW971860.1:113526069-113526088
TAGCCTTTTATCTAATTATTTCATTTGAAA113526069ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OX389803.1:113981870-113981889
TAGCCTTTTATCTAATTATTTCATTTGAAA113981870ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OX390155.1:113706066-113706085
TAGCCTTTTATCTAATTATTTCATTTGAAA113706066ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Mus musculus genome assembly, chromosome: 9.
OX439025.1:120960327-120960346
TAGCCTTTTATCTAATTATTTCATTTGAAA120960327ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC
Trifolium pratense cDNA clone:RCC00310.
BB928978.1:531-550
TGTAGGGTTGTTGTTGTTGTTGGTGTTGGT531ATTGTTGGGGGATTGTGTGTGGAGCCATGCCAGGT
Trifolium pratense cDNA clone:RCC03705.
BB931844.1:531-550
TGTAGGGTTGTTGTTGTTGTTGTTGTTGGT531ATTGTTGGGGGATTGTGTGTGGAGCCATGCCAGGTCCTCCAGGTTGCATC
Trifolium pratense cDNA clone:RCC05120.
BB933045.1:545-564
TGTAGGGTTGTTGTTGTTGTTGTTGTTGGT545ATTGTTGGGGGATTGTGTGTGGAGCCATGCCAGGTCCTCCAGGTTGCATC
Trifolium pratense cDNA clone:RCC11272.
BB938066.1:531-550
TGTAGGGTTGTTGTTGTTGTTGTTGTTGGT531ATTGTTGGGGGATTGTGTGTGGAGCCATGCCAGGTCCTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACACACAATCCCCCAACAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACACACAATCCCCCAACAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.200 | 0.191 | search_plus_done; http://172.18.8.135:50400/match?q=ACACACAATCCCCCAACAAT&k=0&no_gap=0&offset=0&limit=50
0.367 | 0.168 | search_minus_done; http://172.18.8.135:50400/match?q=ATTGTTGGGGGATTGTGTGT&k=0&no_gap=0&offset=0&limit=45
0.383 | 0.015 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).