GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:30:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Allium fistulosum mRNA, contig: AFU_08169.
FX561894.1:973-994
GTTGAAAGTTTTGAAATGTTAACTGAGAAT973ACCAAAACTGGAGTTTGCTACTATTCTACTATGGAAAAGAATGAAGAAGAAG
TSA: Allium cepa CUDHLF2_5351 mRNA sequence.
JR848169.1:334-355
GTTGAAAGTTTTGAAATGTTAACTGAGAAT334ACCAAAACTGGAGTTTGCTACTATTCTACTATGGAAAAGAATGAAGAAGAAC
TSA: Allium sativum Unigene47846_All.Ascvb, mRNA sequence.
JV274272.1:166-187
GTGGAAAGCTTTGAAATGTTAACTGAGAAT166ACCAAAACTGGAGTTTGCTACTATTCTACCATGGAA
Allium cepa genome assembly, chromosome: 8.
LR994636.1:162598784-162598805
GTTGAAAGTTTTGAAATGTTAACTGAGAAT162598784ACCAAAACTGGAGTTTGCTACTATTCTACTATGGAAAAGAATGAAGAAGAAC
Carassius carassius genome assembly, chromosome: 33.
OY720500.1:12442296-12442317
ATTTTGCTTTCCTGCATTTAGCAGTTGCAA12442296AGTAGCAAACTCCAGTTTTGGTGTTCCGTTGCTAATATTATGCTCCGTTTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACCAAAACTGGAGTTTGCTACT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCAAAACTGGAGTTTGCTACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.124 | 0.115 | search_plus_done; http://172.18.8.135:50400/match?q=ACCAAAACTGGAGTTTGCTACT&k=0&no_gap=0&offset=0&limit=50
0.153 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=AGTAGCAAACTCCAGTTTTGGT&k=0&no_gap=0&offset=0&limit=46
0.154 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).