GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-06 00:23:01, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

127b03 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN961755.1:268-287
TCGTGGCAGTGGCACGAACCGCCTGGAGAA268ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
200h06 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN963870.1:268-287
TCGTGGCAGTGGCACGAACCGCCTGGAGAA268ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
210c11 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN964384.1:268-287
TCGTGGCAGTGGCACGAACCGCCTGGAGAA268ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
3g2w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965417.1:266-285
TCGTGGCAGTGGCACGAACCGCCTGGAGAA266ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
0121689 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV116377.1:460-479
TCGTGGCAGTGGCACGAACCTCCTGGAGAA460ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
0165487 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163917.1:461-480
TCGTGGCAGTGGCACGAACCTCCTGGAGAA461ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
0165605 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163962.1:457-476
TCGTGGCAGTGGCACGAACCTCCTGGAGAA457ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
0198824 Brassica napus Undamaged cotyledons Brassica napus cDNA, mRNA sequence.
EV185304.1:461-480
TCGTGGCAGTGGCACGAACCGCCTGGAGAA461ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
RS2B193JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW729372.1:424-443
TCGTGACAATGGCACGAACCACCTGGAGAA424ACGTTCAGCTTCACCTTGTGGACAATCACACGCCACAGCTCCATCTCCGA
BR105307 defected leaf cDNA library KHLD Brassica rapa subsp. pekinensis cDNA clone KHLD-26E12 3', mRNA sequence.
EX121477.1:497-516
TCGTGGCAGTGGCACGAACCGCCTGGAGAA497ACGTTCAGCTTCACCTTGTGGACG
RR4EQ46JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD553112.1:462-481
TCGTGACAATGGCACGAACCGCCTGGAGAA462ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_25862.
FX733399.1:473-492
TCGTGGCAGTGGCACGAACCGCCTGGAGAA473ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8052.
FX738480.1:515-534
TCGTGACAATGGCACGAACCGCCTGGAGAA515ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
TSA: Raphanus sativus RS04400 mRNA sequence.
JT788947.1:555-574
TCGTGACAATGGCACGAACCGCCTGGAGAA555ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica rapa subsp. pekinensis GSS, clone KBrH054M11, end read, primer M13(forward).
AJ861903.1:195-214
TCGTGGCAGTGGCACGAACCGCCTGGAGAA195ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
BOGRE18TF BOGR Brassica oleracea genomic clone BOGRE18, genomic survey sequence.
BH449016.1:645-664
TCGTGGCAGTGGCACGAACCGCCTGGAGAA645ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
SIR-49A9JR Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-49A9, genomic survey sequence.
FI811665.1:342-361
TCGTGGCAATGAAACGAACCGCCTGGAGAA342ACGTTCAGCTTCACCTTGTGGACGATCACACGCCATAGCTCGGTCTCCGA
SIR-66I10TF Sisymbrium irio BAC library SIR Sisymbrium irio genomic clone SIR-66I10, genomic survey sequence.
FI830522.1:141-160
TCGTGGCAATGAAACGAACCGCCTGGAGAA141ACGTTCAGCTTCACCTTGTGGACGATCACACGCCATAGCTCGGTCTCCGA
HDE291C07.R HDE Setaria viridis genomic 3', genomic survey sequence.
KS147036.1:647-666
TCGCCGCAGTGGAACGACGTGCCGGGCGAC647ACGTTCAGCTTCACCTTGTGTATGATCACCCGCCACAGCTCCAGCTCCGC
Setaria viridis cultivar ME034v chromosome 7.
CP050801.1:26786985-26787004
TCGCCGCAGTGGAACGACGTGCCGGGCGAC26786985ACGTTCAGCTTCACCTTGTGTATGATCACCCGCCACAGCTCCAGCTCCGC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:18836106-18836125
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18836106ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica napus cultivar Xiang5A chromosome 9.
CP151904.1:18452591-18452610
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18452591ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:28766484-28766503
TCGTGGCAGTGGCACGAACCGCCTGGAGAA28766484ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:18250660-18250679
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18250660ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:29007672-29007691
TCGTGGCAGTGGCACGAACCGCCTGGAGAA29007672ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica rapa genome, scaffold: A09.
LR031568.1:18399969-18399988
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18399969ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:28924245-28924264
TCGTGGCAGTGGCACGAACCGCCTGGAGAA28924245ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:18728809-18728828
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18728809ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Phragmites australis genome assembly, chromosome: 7.
OY282618.1:32513209-32513228
TCGCTGCAGTGGAACGACGTGCCGGGCGAC32513209ACGTTCAGCTTCACCTTGTGTATGATCACCCGCCACAGCTCCAGCTCCGC
Cardamine chenopodiifolia genome assembly, chromosome: 32.
OZ000490.1:2278298-2278317
TCGTGGCAATGGAACGAACCACCTGGTGAC2278298ACGTTCAGCTTCACCTTGTGGACGATCACACGCCATAGCTCAGTCTCCGA
Armoracia rusticana genome assembly, chromosome: 14.
OZ278779.1:4223461-4223480
TCGTGGCAATGGAACGAACCACCTGGAGAC4223461ACGTTCAGCTTCACCTTGTGGACGATCACACGCCATAGCTCAGTCTCCGA
Armoracia rusticana genome assembly, chromosome: 15.
OZ278780.1:3794841-3794860
TCGTGGCAATGGAACGAACCACCTGGAGAC3794841ACGTTCAGCTTCACCTTGTGGACGATCACACGCCATAGCTCGGTCTCCGA
Armoracia rusticana genome assembly, chromosome: 14.
OZ278841.1:4252314-4252333
TCGTGGCAATGGAACGAACCACCTGGAGAC4252314ACGTTCAGCTTCACCTTGTGGACGATCACACGCCATAGCTCAGTCTCCGA
Brassica oleracea genome assembly, chromosome: 9.
OZ281592.1:29136412-29136431
TCGTGGCAGTGGCACGAACCGCCTGGAGAA29136412ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica oleracea genome assembly, chromosome: 9.
OZ281602.1:30140489-30140508
TCGTGGCAGTGGCACGAACCGCCTGGAGAA30140489ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica rapa subsp. trilocularis genome assembly, chromosome: 9.
OZ282423.1:18346250-18346269
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18346250ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica oleracea var. botrytis genome assembly, chromosome: 9.
OZ282434.1:28755539-28755558
TCGTGGCAGTGGCACGAACCGCCTGGAGAA28755539ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Brassica rapa subsp. narinosa genome assembly, chromosome: 9.
OZ282450.1:18817437-18817456
TCGTGGCAGTGGCACGAACCGCCTGGAGAA18817437ACGTTCAGCTTCACCTTGTGGACGATCACACGCCACAGCTCCATCTCCGA
Melica nutans genome assembly, chromosome: 6.
OZ291610.1:182152210-182152229
TCGCGGCAGTGGAACGACGTGCCCGGCGAC182152210ACGTTCAGCTTCACCTTGTGTATGATCACGCGCCACAGCTCCAGCTCCGC
Arca noae genome assembly, chromosome: 4.
OZ178934.1:82782001-82782020
AAGTGGTTCTGCTGGCATTTCAGTTTCCAT82782001ACGTTCAGCTTCACCTTGTGGAGCAGACGGTAAAAATTCAGATATCTGCT
Erebia manto genome assembly, chromosome: 24.
OZ209942.1:10192334-10192353
TGTGCACGACAAAGATCATTTCTAATGCAA10192334ACGTTCAGCTTCACCTTGTGTTAGTTGAAAACTCAAATTGTTGATGAGTC
Sequence 20337 from Patent WO2008034648.
FB801064.1:1174-1193
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1174CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Sequence 72336 from Patent WO2008034648.
FB853063.1:1174-1193
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1174CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Sequence 20337 from Patent EP2090662.
HB671123.1:1174-1193
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1174CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Sequence 72336 from Patent EP2090662.
HB723122.1:1174-1193
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1174CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Sequence 197426 from Patent EP2090662.
HB848212.1:1165-1184
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1165CACAAGGTGAAGCTGAACGTTTCTCCAGGAGGTTCGTGCCACTGCCACGA
103A4w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN960497.1:529-548
TCGGAGATGGAGCTGTGGCGTGTGATCGTC529CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
127c05w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN961769.1:529-548
TCGGAGATGGAGCTGTGGCGTGTGATCGTC529CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
148G02w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN963204.1:527-546
TCGGAGATGGAGCTGTGGCGTGTGATCGTC527CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGGCCACA
225d08w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965304.1:529-548
TCGGAGATGGAGCTGTGGCGTGTGATCGTC529CACAAGGTGAAGCTGAACGTTTCTCCANGGCGGTTCGTGCCACTGCCACG
E05_02SC_1BS Brassica napus leaf infected with Sclerotinia sclerotiorum EST library Brassica napus cDNA 5', mRNA sequence.
DV643309.1:133-152
TCGGAGATGGAGCTGTGGCGTGTGATCGTC133CACAAGGTGAAGCTGAACGTTTCTCCAGGAGGTTCGTGCCACTGCCACGA
0165644 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163998.1:460-479
TCGGAGATGGAGCTGTGGCGTGTGATCGTC460CACAAGGTGAAGCTGAACGTTTCTCCAGGAGGTTCGTGCCACTGCCACGA
0165768 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV164051.1:461-480
TCGGAGATGGAGCTGTGGCGTGTGATCGTC461CACAAGGTGAAGCTGAACGTTTCTCCAGGAGGTTCGTGCCACTGCCACGA
BR011660 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-041E07 5', mRNA sequence.
EX027016.1:260-279
TCGGAGATGGAGCTGTGGCGTGTGATCGTC260CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
BR013035 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-060E10 5', mRNA sequence.
EX028391.1:259-278
TCGGAGATGGAGCTGTGGCGTGTGATCGTC259CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3482.
FX658237.1:1418-1437
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1418CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCATTGTCACGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_12921.
FX696674.1:1348-1367
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1348CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
TSA: Chorispora bungeana CK_00985 mRNA sequence.
JW989051.1:1341-1360
TCCGAGACAGAGCTATGGCGCATGATCGTC1341CACAAGGTGAAGCTGAACGTGTCTCCAGGTGGTTCGTTCCATTGCCACGA
TSA: Chorispora bungeana T_40201 mRNA sequence.
KA077031.1:1359-1378
TCCGAGACAGAGCTATGGCGCATGATCGTC1359CACAAGGTGAAGCTGAACGTGTCTCCAGGTGGTTCGTTCCATTGCCACGA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:39784724-39784743
TCGGAGATGGAGCTGTGGCGTGTGATCGTC39784724CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA
Brassica oleracea var. gemmifera ACC synthase mRNA, partial cds.
EU921648.1:999-1018
TCGGAGATGGAGCTGTGGCGTGTGATCGTC999CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTTGTGCCACTGCCACGA
Thlaspi arvense genome assembly, chromosome: 6.
OU466862.2:57315906-57315925
TCGGAGACGGAGCTATGGCGTGTGATCGTC57315906CACAAGGTGAAGCTGAACGTTTCTCCAGGTGGTTCGTTCCATTGCCACGA
Phragmites australis genome assembly, chromosome: 13.
OY282624.1:26239816-26239835
GCGGAGCTGGAGCTGTGGCGGGTAATCATA26239816CACAAGGTGAAGCTGAACGTATCGCCGGGCACTTCGTTCCACTGCCGCGA
Barbarea vulgaris genome assembly, chromosome: 8.
OY763894.1:20202614-20202633
TCGGAGACTGAGCTATGGCGTGTGATCGTC20202614CACAAGGTGAAGCTGAACGTGTCTCCAGGTGGTTCGTTCCATTGCCACGA
Cardamine chenopodiifolia genome assembly, chromosome: 8.
OZ000466.1:13272584-13272603
TCGGAGACTGAGCTATGGCGTGAGATTGTC13272584CACAAGGTGAAGCTGAACGTATCTCCGGGTGGTTCGTTCCATTGCCATGA
Cardamine chenopodiifolia genome assembly, chromosome: 24.
OZ000482.1:12964050-12964069
TCGGAGACCGAGCTATGGCGTGTGATCGTC12964050CACAAGGTGAAGCTGAACGTGTCTCCAGGTGGTTCATTCCATTGCCACGA
Matthiola sinuata genome assembly, chromosome: 6.
OZ209986.1:147441166-147441185
TCCGAGACAGAGCTGTGGCGCATGATCGTC147441166CACAAGGTGAAGCTGAACGTGTCTCCGGGTGGATCATTCCATTGCCACGA
Melica nutans genome assembly, chromosome: 6.
OZ291619.1:59875844-59875863
GCGGAGCTGGAGCTGTGGCGCGTGATCATA59875844CACAAGGTGAAGCTGAACGTGTCGCCGGGCACGTCGTTCCACTGCCGCGA
B.oleracea mRNA for ACC synthase.
X82273.1:1231-1250
TCGGAGATGGAGCTGTGGCGTGTGATCGTC1231CACAAGGTGAAGCTGAACGTTTCTCCAGGCGGTTCGTGCCACTGCCACGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACGTTCAGCTTCACCTTGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACGTTCAGCTTCACCTTGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.285 | 1.276 | search_plus_done; http://172.18.8.135:50900/match?q=ACGTTCAGCTTCACCTTGTG&k=0&no_gap=0&offset=0&limit=50
2.456 | 1.171 | search_minus_done; http://172.18.8.135:50900/match?q=CACAAGGTGAAGCTGAACGT&k=0&no_gap=0&offset=0&limit=9
2.475 | 0.020 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).