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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:20:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-024K11, 5' end sequence.
DK464974.1:326-345
ACAGATTCATTCCCAACAGATCAGCCATGG326ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
Brassica oleracea var. viridis mRNA, clone: KALE-044K12, 5' end sequence.
DK472611.1:307-326
ACAGATTCATACCCAACAGATCAGCCATGG307ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
Brassica oleracea var. viridis mRNA, clone: KALE-053P23, 5' end sequence.
DK476182.1:307-326
ACAGATTCATACCCAACAGATCAGCCATGG307ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
Brassica oleracea var. viridis mRNA, clone: KALE-116E19, 5' end sequence.
DK500020.1:307-326
ACAGATTCATACCCAACAGATCAGCCATGG307ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
48RDOAM_UP_031_E09_13SEP2004_071 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
DY018504.1:316-335
ACAGATTCATACCCAACAGATCAGCCATGG316ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
53COT5_T3_015_A06_05SEP2004_048 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY023705.1:315-334
ACAGATTCATACCCAACAGATCAGCTATGG315ACTTCGACTATGCTCACTACGCCCTCACCGAAGGTAGGAACGGGAAAGAT
47RDOAH_UP_005_C03_27JUL2004_027 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY026002.1:314-333
ACAGATTCATACCCAACAGATCAGCCATGG314ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
BNQA_UP_070_E11_30MAY2005_087 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE552248.1:67-86
ACAGATTCATACCCAACAGATCAGCTATGG67ACTTCGACTATGCTCACTACGCCCTCACCGAAGGTAGGAACGGGAAAGAT
65JKBNMO_UP_052_B01_17JUL2006_013 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL591049.1:290-309
ACAGATTCATACCCAACAGATCAGCCATGG290ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
0179655 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV099646.1:263-282
ACAGATTCATACCCAACAGATCAGCCATGG263ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
BR044003 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-057B09 5', mRNA sequence.
EX059359.1:226-245
ACAGATTCATTCCCAACAGATCAGCCATGG226ACTTCGACTATGCTCACTACGCTCTTACCGAAGGTAGGAACGGGAAAGAT
BNAOV1GH_T3_038_D02_12JUL2007_010 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR442924.1:271-290
ACAGATTCATACCCAACAGATCAGCCATGG271ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
BNAOV1GH_T3_111_A02_22SEPT2007_016 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR445720.1:294-313
ACAGATTCATACCCAACAGATCAGCCATGG294ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004O21, complete sequence.
AC189637.2:103754-103773
ACAGATTCATTCCCAACAGATCAGCCATGG103754ACTTCGACTATGCTCACTACGCTCTTACCGAAGGTAGGAACGGGAAAGAT
Brassica napus mRNA with similarity to p55cdc and fizzy genes.
AJ224078.1:283-302
ACAGATTCATACCCAACAGATCAGCCATGG283ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2284820-2284839
ACAGATTCATACCCAACAGATCAGCAATGG2284820ACTTCGACTATGCTCACTACGCTCTTACCGAAGGTAGGAACGGGAAAGAT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:2227290-2227309
ACAGATTCATACCCAACAGATCAGCAATGG2227290ACTTCGACTATGCTCACTACGCTCTTACCGAAGGTAGGAACGGGAAAGAT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:2835665-2835684
ACAGATTCATACCCAACAGATCAGCCATGG2835665ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
Brassica rapa genome, scaffold: A01.
LR031571.1:2217905-2217924
ACAGATTCATACCCAACAGATCAGCTATGG2217905ACTTCGACTATGCTCACTACGCCCTCACCGAAGGTAGGAACGGGAAAGAT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:2784902-2784921
ACAGATTCATACCCAACAGATCAGCCATGG2784902ACTTCGACTATGCTCACTACGCCCTTACCGAAGGAAGGAACGGGAAAGAT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:2218028-2218047
ACAGATTCATACCCAACAGATCAGCTATGG2218028ACTTCGACTATGCTCACTACGCCCTCACCGAAGGTAGGAACGGGAAAGAT
BCXiang2_FW_002_C06_06March2003_022 Brassica carinata - Xiang2 Brassica carinata cDNA 5', mRNA sequence.
EE546153.1:215-234
ATCTTTCCCGTTCCTTCCTTCGGTAAGGGC215GTAGTGAGCATAGTCGAAGTCCATGGCTGATCTGTTGGGTATGAATCTGT
BCXiang2_UP_028_E07_12March2003_028 Brassica carinata - Xiang2 Brassica carinata cDNA 5', mRNA sequence.
EE547922.1:207-226
ATCTTTCCCGTTCCTTCCTTCGGTAAGGGC207GTAGTGAGCATAGTCGAAGTCCATGGCTGATCTGTTGGGTATGAATCTGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15587.
FX697536.1:1327-1346
ATCTTTCCCGTTCCTACCTTCGGTAAGAGC1327GTAGTGAGCATAGTCGAAGTCCATGGCTGATCTGTTGGGAATGAATCTGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_17084.
FX731494.1:1385-1404
ATCTTTCCCGTTCCTACCTTCGGTAAGAGC1385GTAGTGAGCATAGTCGAAGTCCATTGCTGATCTGTTGGGTATGAATCTGT
Brassica rapa subsp. pekinensis clone KBrH055H09, complete sequence.
CU695303.1:126224-126243
ATCTTTCCCGTTCCTACCTTCGGTAAGAGC126224GTAGTGAGCATAGTCGAAGTCCATGGCTGATCTGTTGGGAATGAATCTGT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:54265771-54265790
ATCTTTCCCGTTCCTTCCTTCGGTAAGGGC54265771GTAGTGAGCATAGTCGAAGTCCATGGCTGATCTGTTGGGTATGAATCTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACTTCGACTATGCTCACTAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACTTCGACTATGCTCACTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.134 | 1.125 | search_plus_done; http://172.18.8.135:50400/match?q=ACTTCGACTATGCTCACTAC&k=0&no_gap=0&offset=0&limit=50
1.335 | 0.201 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGTGAGCATAGTCGAAGT&k=0&no_gap=0&offset=0&limit=29
1.339 | 0.004 | cgi_end;

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