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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:12:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica oleracea var. viridis mRNA, clone: KALE-050I24, 5' end sequence.
DK474870.1:198-222
CCTCATTCTTCATCTTACAATCTTTCAATC198AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
47RDOAH_UP_061_E06_30JAN2006_040 Brassica oleracea 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
ES940801.1:58-82
CCTCATTCTTCATCTTACAATCTTTCAATC58AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
0127810 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV122498.1:132-156
CCTCATTCTTCATCTTACAATCTTTCAATC132AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:44598285-44598309
CCTCATTCTTCATCTTACAATCTTTCAATC44598285AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:43696388-43696412
CCTCATTCTTCATCTTACAATCTTTCAATC43696388AGAAAATGGCGGATCATGACCAAGGCGCCGTGACTCTCTACAGCGGCACAGCCAT
BOHOA22TR BOHO Brassica oleracea genomic clone BOHOA22, genomic survey sequence.
BH468790.1:214-238
ATGGCTGTGCCGCTGTAGAGAGTCACGGCG214CCTTGGTCATGATCCGCCATTTTCTGATTGAAAGATTGTAAGATGAAGAATGAGG
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:8778735-8778759
ATGGCTGTGCCGCTGTAGAGAGTCACGGCG8778735CCTTGGTCATGATCCGCCATTTTCTGATTGAAAGATTGTAAGATGAAGAATGAGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGAAAATGGCGGATCATGACCAAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAAAATGGCGGATCATGACCAAGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.349 | 0.340 | search_plus_done; http://172.18.8.135:50400/match?q=AGAAAATGGCGGATCATGACCAAGG&k=0&no_gap=0&offset=0&limit=50
0.424 | 0.076 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTGGTCATGATCCGCCATTTTCT&k=0&no_gap=0&offset=0&limit=45
0.426 | 0.001 | cgi_end;

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