GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:11:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

EG-A11_005_E05 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN599978.1:42-65
TGGCTAACCAACACGAGATAGAAGCTGTGG42AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
EoEST0255 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-165 5' similar to Unknown protein [Note: similar to Oryza sativa (japonica cultivar-group) clone Os03g0299600, gen
EL563848.1:154-177
TGGCTAACCAACACGAGATAGAAGCTGTGG154AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
OPMF00546 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 121-G03-T3.seq, mRNA sequence.
EL684309.1:169-192
TGGCTAACCAACACGAGATAGAAGCTGTGG169AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
OPMF01253 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 133-B04-T3.seq, mRNA sequence.
EL685013.1:163-186
TGGCTAACCAACACGAGATAGAAGCTGTGG163AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
OPSC00425 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 185-E1-T3.seq, mRNA sequence.
EL688670.1:13-36
TAGAAGCTGTGG13AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
pOP-EO03063_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03063 5', mRNA sequence.
EY410606.1:111-134
TGGCTAACCAACACGAGATAGAAGCTGTGG111AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
EG-M11_007_G07 InfSSHM1, normal male inflorescence Elaeis guineensis cDNA clone EG-M11_007_G07 non-orientated, mRNA sequence.
GT119615.1:183-206
TGGCTAACCAACACGAGATAGAAGCTGTGG183AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
Elaeis guineensis EST, clone (6lib)_isotig32473.
LM627526.1:164-187
TGGCTAACCAACACGAGATAGAAGCTGTGG164AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
TSA: Elaeis guineensis isotig11010.Elguifruit mRNA sequence.
JO098237.1:131-154
TGGCTAACCAACACGAGATAGAAGCTGTGG131AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA
Elaeis guineensis large subunit ribosomal protein L17 (RPL17) mRNA, complete cds.
KC146050.1:553-576
TGGCTAACCAACACGAGATAGAAGCTGTGG553AGACACAGGAAGAGAGCCACAAGTGGGTGGTGCGAGCGCTGTATGAGGCGTTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGACACAGGAAGAGAGCCACAAGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGACACAGGAAGAGAGCCACAAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.761 | 0.752 | search_plus_done; http://172.18.8.135:50400/match?q=AGACACAGGAAGAGAGCCACAAGT&k=0&no_gap=0&offset=0&limit=50
0.869 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=ACTTGTGGCTCTCTTCCTGTGTCT&k=0&no_gap=0&offset=0&limit=40
0.869 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).