GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:41:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Daucus carota subsp. sativus cultivar DH1 chromosome 5.
CP093347.1:47077130-47077150
GAGTGGAGGATAAGGCCAACAGTGTCGTCA47077130AGCCATTGATAGTCGCTGAAGGCATGATGGCCACATTCATGGGCTATGACC
Daucus carota isolate Kuroda chromosome 5.
CP125305.1:45519122-45519142
GAGTGGAGGATAAGGCCAACAGTGTCGTCA45519122AGCCATTGATAGTCGCTGAAGGCATGATGGCCACATTCATGGGCTATGACC
AGN_RPC006xk07f1.ab1 AGN_RPC Nicotiana tabacum cDNA 5', mRNA sequence.
FG147150.1:433-453
GGTCATTGCCCATGAATGTGGTCACCATGC433CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
AGN_RNC116xc13f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence.
FG148776.1:473-493
GGTCATTGCCCATGAATGTGGTCACCATGC473CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
AGN_PNL218af1_c10.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG191642.1:469-489
GGTCATTGCCCATGAATGTGGTCACCATGC469CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
AGN_PNL231cf1_f1.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG201504.1:415-435
GGTCATTGCCCATGAATGTGGTCACCATGC415CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
Nicotiana tabacum cDNA, clone: TBK01A01NGRL0016_2_B05, 5'-end sequence.
FS378378.1:440-460
GGTCATTGCCCATGAATGTGGTCACCATGC440CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
Nicotiana tabacum cDNA, clone: TBK01A01NGRL0017_2_A10, 5'-end sequence.
FS378715.1:460-480
GGTCATTGCCCATGAATGTGGTCACCATGC460CTTCAGCGACTATCAATGGCTTGATGATACTGTTGG
NSYL369 Nicotiana sylvestris normalized full-length cDNA Library Nicotiana sylvestris cDNA 5', mRNA sequence.
JZ957625.1:449-469
GGTCATTGCCCATGAATGTGGTCACCATGC449CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC
TSA: Psychotria gabriellae, clone contig_22309.
HE843530.1:78-98
GGTCATTGCCCACGAATGCGGCCACCATGC78CTTCAGCGACTATCAATGGCTTGATGACACTGTTGGCCTCATCCTGCATTC
CHO_OF3337xb02f1.ab1 CHO_OF3 Nicotiana tabacum genomic 5', genomic survey sequence.
FH216607.1:54-74
GGTCATTGCCCATGAATGTGGTCACCATGC54CTTCAGCGACTATCAATGGCTTGATGATACTGTTGGCCTTGTCCTACATTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCCATTGATAGTCGCTGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCCATTGATAGTCGCTGAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.158 | 0.150 | search_plus_done; http://172.18.8.135:50400/match?q=AGCCATTGATAGTCGCTGAAG&k=0&no_gap=0&offset=0&limit=50
1.084 | 0.925 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCAGCGACTATCAATGGCT&k=0&no_gap=0&offset=0&limit=48
1.090 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).