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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 13:00:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-08.
CP023120.1:14698912-14698931
TTACACAATTTTTTCAGATTCAAACCACAC14698912AGCGTTCAACCCAAACAAAATGGTTTCATTCCAAATGAATCCTACCTTTT
Sambucus nigra genome assembly, chromosome: 3.
OX422209.1:531864876-531864895
ATTAAAACCATCCAAACTAGTTGCCCCGTC531864876AGCGTTCAACCCAAACAAAACATCCTGAATTTCTTCCAATGAAGGGACTG
Sambucus nigra genome assembly, chromosome: 12.
OX422218.1:467650511-467650530
ATTAAAACCATTCGGACCGGCCGCCCCGTC467650511AGCGTTCAACCCAAACAAAACATCCTGAATTTCTTCCAATGAAGGGACTG
Sambucus nigra genome assembly, chromosome: 17.
OX422223.1:346927096-346927115
ATTAAAACCATCCGGATCGACCGCCCGGTC346927096AGCGTTCAACCCAAACAAAACAAAATGAATTTCTTCCAACGAAGGGACTG
ICPM1C02 Microsatellite enriched genomic DNA library of pigeonpea Cajanus cajan genomic clone ICPM1C02 5', genomic survey sequence.
FI131371.1:299-318
AGTTTATTCTCACTCTATGTGGTTGTATGT299TTTTGTTTGGGTTGAACGCTACTTGCAATATTAGATCAAGTGATTCTGCT
Sambucus nigra genome assembly, chromosome: 8.
OX422214.1:222097695-222097714
CAGTCCCTTCGTTGGAAGAAATTCAAGATG222097695TTTTGTTTGGGTTGAACGCTGATGGGGCGGTCGGTCCGGATGGTTTCAAT
Sambucus nigra genome assembly, chromosome: 10.
OX422216.1:624592540-624592559
CAGTCCCTTCGTTGGAAGAAATTCAGGATG624592540TTTTGTTTGGGTTGAACGCTGACGGGGCGGCCGGTCCGGATGGTTTTAAT
Nephrotoma guestfalica genome assembly, chromosome: 2.
OY829914.1:284645474-284645493
AGGGCCTGATTACTTGGAGCCTTTTTAACA284645474TTTTGTTTGGGTTGAACGCTTTTGACAAAATTTAGTGGGGCAGAGGCTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCGTTCAACCCAAACAAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCGTTCAACCCAAACAAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.352 | 0.343 | search_plus_done; http://172.18.8.135:50400/match?q=AGCGTTCAACCCAAACAAAA&k=0&no_gap=0&offset=0&limit=50
0.495 | 0.143 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTGTTTGGGTTGAACGCT&k=0&no_gap=0&offset=0&limit=46
0.498 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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