GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:26:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cottoperca gobio genome assembly, chromosome: 16.
LR131923.1:3550943-3550963
CCCGTCTTTAAACATTTCTTTTTGACTATT3550943AGCTCCTCAACTGCCTTTTATGTGAATGAGAGGGAGCCGAGTGCACACTTT
Echeneis naucrates genome assembly, chromosome: 6.
LR584047.1:17134506-17134526
CACCACAGTCTGTCTTTGTTTCTTTTGAGT17134506AGCTCCTCAACTGCCTTTTATGTGAATGAGGGGGAGCTTTATACAAGCAGA
Trachurus trachurus genome assembly, chromosome: 16.
LR991639.1:14560164-14560184
AGCCTGTCTTTACTCTTTTTCTTTTTGAAT14560164AGCTCCTCAACTGCCTTTTATGTGAATGAGAGGGAGCTTTATATGAGCAGA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:148601655-148601675
ATGAATTGGTCAGCAAGGAAGACGACAGGA148601655AGCTCCTCAACTGCCTTTTATAATATAAGTAATAAAATAAAATAATATATA
Meconema thalassinum genome assembly, chromosome: 4.
OX336392.1:539205644-539205664
ATCCCAATCAAAAAAGATCAGAAGCTCAAA539205644AGCTCCTCAACTGCCTTTTATACATGCGCATAGTAATCATCATTTTCCAGT
KS14007B12 KS14 Capsicum annuum cDNA, mRNA sequence.
GD058064.1:380-400
TATATATTATTTTATTTTATTACTTATATT380ATAAAAGGCAGTTGAGGAGCT
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:167698105-167698125
TATATATTATTTTATTTTATTACTTATATT167698105ATAAAAGGCAGTTGAGGAGCTTCCTGTCGTCTTCCTTGCTGACCAATTCAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCTCCTCAACTGCCTTTTAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCTCCTCAACTGCCTTTTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.343 | 0.334 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTCCTCAACTGCCTTTTAT&k=0&no_gap=0&offset=0&limit=50
0.516 | 0.173 | search_minus_done; http://172.18.8.135:50400/match?q=ATAAAAGGCAGTTGAGGAGCT&k=0&no_gap=0&offset=0&limit=45
0.517 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).