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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 20:06:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BNZB_RP_011_G01_23APR2004_003 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE557117.1:174-193
TCAAGAAACCATATAATAACATAAAAATAG174AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA
0170734 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV135608.1:158-177
TCAAGAAACCATATAATAACATAAAAATAG158AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA
0164743 Brassica napus Late bud Brassica napus cDNA, mRNA sequence.
EV163542.1:173-192
TCAAGAAACCATATAATAACATAAAAATAG173AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA
0148250 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV169630.1:239-258
TCAAGAAACCATACAATAACATAAAAATAG239AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA
BR013314 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-064F07 5', mRNA sequence.
EX028670.1:7-26
AAATAG7AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_889.
FX724439.1:164-183
TCAAGAAACCATACAATAACATAAAAATAG164AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49346.
FX787001.1:138-157
TCAAGAAACCATACAATAACATAAAAATAG138AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA
BOGVF13TR BOGV Brassica oleracea genomic clone BOGVF13, genomic survey sequence.
BH537178.1:45-64
TCAAGAAACCATACAATAACATAAAAATAT45AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA
Eustoma grandiflorum DNA, chromosome 11, draft genome sequence.
AP025050.1:31448482-31448501
TGTGACAACAAGGCGACAATATCAAGGATA31448482AGCTTGAGAGTGGTGTTGTTGAGATTCCGTTTGTGCACACAAAAGAACAG
Eustoma grandiflorum DNA, chromosome 11, draft genome sequence.
AP025050.1:31559958-31559977
TGTGACAACAAGGCGGCAATATCAAGGATA31559958AGCTTGAGAGTGGTGTTGTTGAGATTCCGTTTGTGCACACAAAAGAACAG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:9917579-9917598
TCAAGAAACCATACAATAACATAAAAATAG9917579AGCTTGAGAGTGGTGTTGTTGAATTTACTCTTCAGGGTGGACAACGCTGA
Scytonema sp. HK-05 DNA, nearly complete genome.
AP018194.1:4587325-4587344
ATAACATCCCAAACGACAGAGGAGTTTAAA4587325AGCTTGAGAGTGGTGTTGTTCCAGACGGTTAAACTGACTGGTAACTAAAT
BN25.047K01F020109 BN25 Brassica napus cDNA clone BN25047K01, mRNA sequence.
CD823090.1:268-287
TCAGCGTTGTCCACCCTGAAGAGTAAATTC268AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
38RDBRM_UP_002_D09_30MAR2004_073 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX265703.1:266-285
TCAGCGTTGTCCACCCTGAAGAGTAAATTC266AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
39RDBRT_UP_044_G06_21JUL2004_036 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272770.1:287-306
TCAGCGTTGTCCACCCTGAAGAGTAAATTC287AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
Brassica oleracea var. viridis mRNA, clone: KALE-055H05, 5' end sequence.
DK476738.1:733-752
TCAGCGTTGTCCACCCTGAAGAGTAAATTC733AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
Brassica oleracea var. viridis mRNA, clone: KALE-055H05, 3' end sequence.
DK536341.1:633-652
TCAGCGTTGTCCACCCTGAAGAGTAAATTC633AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
32ETGS24_UP_008_C07_12MAR2004_059 Brassica napus 32ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE426129.1:268-287
TCAGCGTTGTCCACCCTGAAGAGTAAATTC268AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
35ETGS60_UP_001_H07_24MAR2004_049 Brassica napus 35ETGS60 Brassica napus cDNA 5', mRNA sequence.
EE431218.1:272-291
TCAGCGTTGTCCACCCTGAAGAGTAAATTC272AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
74ETGS48_UP_014_A08_28APR2005_064 74ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE447383.1:276-295
TCAGCGTTGTCCACCCTGAAGAGTAAATTC276AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
BNBS8DCT_UP_026_B10_17APR2005_078 Brassica napus seeds BNBS8DCT Brassica napus cDNA 5', mRNA sequence.
EE460235.1:277-296
TCAGCGTTGTCCACCCTGAAGAGTAAATTC277AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
24RDBNH_UP_073_H01_01NOV2005_001 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
EE509739.1:258-277
TCAGCGTTGTCCACCCTGAAGAGTAAATTC258AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
36RDBRG_UP_012_H08_10JUN2004_050 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE517153.1:278-297
TCAGCGTTGTCCACCCTGAAGAGTAAATTC278AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
39RDBRT_UP_060_F07_30NOV2005_053 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
EE529472.1:273-292
TCAGCGTTGTCCACCCTGAAGAGTAAATTC273AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
BMSB01-T7-08-F01 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG019617.1:269-288
TCAGCGTTGTCCACCCTGAAGAGTAAATTC269AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
BNARO2GH_T3_003_H04_15DEC2006_018 Brassica napus BNARO2GH Brassica napus cDNA 5', mRNA sequence.
ES913275.1:252-271
TCAGCGTTGTCCACCCTGAAGAGTAAATTC252AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
36RDBRG_UP_104_H11_20JAN2006_081 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES931553.1:308-327
TCAGCGTTGTCCACCCTGAAGAGTAAATTC308AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCATGA
39RDBRT_UP_093_A03_25JAN2006_031 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
ES937205.1:282-301
TCAGCGTTGTCCACCCTGAAGAGTAAATTC282AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
9RDBNGA_UP_146_F03_18SEP2005_021 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES955997.1:254-273
TCAGCGTTGTCCACCCTGAAGAGTAAATTC254AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
9RDBNGA_UP_148_F05_18SEP2005_037 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES956167.1:134-153
TCAGCGTTGTCCACCCTGAAGAGTAAATTC134AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
40JKME7D_UP_037_E07_18JUN2006_055 40JKME7D Brassica napus cDNA 5', mRNA sequence.
ES980811.1:254-273
TCAGCGTTGTCCACCCTGAAGAGTAAATTC254AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
BNSCS4CT_UP_150_E07_22MAY2007_055 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV069983.1:273-292
TCAGCGTTGTCCACCCTGAAGAGTAAATTC273AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
0171682 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV136058.1:258-277
TCAGCGTTGTCCACCCTGAAGAGTAAATTC258AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
0148198 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV169617.1:171-190
TCAGCGTTGTCCACCCTGAAGAGTAAATTC171AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
0156264 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV182754.1:274-293
TCAGCGTTGTCCACCCTGAAGAGTAAATTC274AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
MMN2_1812 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to cytochrome c oxidase subunit Vc family protein / COX5C family protein, mRNA sequence.
GR727195.1:298-317
TCAGCGTTGTCCACCCTGAAGAGTAAATTC298AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:38163178-38163197
TCAGCGTTGTCCACCCTGAAGAGTAAATTC38163178AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:19725003-19725022
TCAGCGTTGTCCACCCTGAAGAGTAAATTC19725003AACAACACCACTCTCAAGCTCTATTTTTATGTTATTATATGGTTTCTTGA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:31933748-31933767
TCAGCGTTGTCCACCCTGAAGAGTAAATTC31933748AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
Brassica rapa genome, scaffold: A07.
LR031574.1:18665471-18665490
TCAGCGTTGTCCACCCTGAAGAGTAAATTC18665471AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:28609293-28609312
TCAGCGTTGTCCACCCTGAAGAGTAAATTC28609293AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:18956779-18956798
TCAGCGTTGTCCACCCTGAAGAGTAAATTC18956779AACAACACCACTCTCAAGCTCTATTTTTATGTTATTGTATGGTTTCTTGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCTTGAGAGTGGTGTTGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCTTGAGAGTGGTGTTGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.502 | 0.493 | search_plus_done; http://172.18.8.135:50400/match?q=AGCTTGAGAGTGGTGTTGTT&k=0&no_gap=0&offset=0&limit=50
2.291 | 1.789 | search_minus_done; http://172.18.8.135:50400/match?q=AACAACACCACTCTCAAGCT&k=0&no_gap=0&offset=0&limit=38
2.310 | 0.019 | cgi_end;

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