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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 07:36:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Camellia sinensis Singletons23863.Casi mRNA sequence.
HP738651.1:826-845
AGAGAGAGAAGCTCTTCATCTTCCCAAAAC826AGGTCCTGTTCCAATACCAACAGATGGAAAAGAGAGAGATTATTATCACT
TSA: Camellia sinensis tea_rep_c13851 mRNA sequence.
KA293134.1:460-479
AGAGAGAGAAGCTCTTCATCTTCCCAAAAC460AGGTCCTGTTCCAATACCAACAGATGGAAAAAGAGAGAGATTATTATCAC
Agelas oroides genome assembly, chromosome: 9.
OX422191.1:2006369-2006388
CTATATCCCAATTCCATTTCCAGACTGCAA2006369AGGTCCTGTTCCAATACCAATTATATGTACATGTTACTGTAAGTTGCTTC
ZYta113 Young leaves cDNA library of tea plant (Camellia sinensis) Camellia sinensis cDNA 5', mRNA sequence.
GH159043.1:228-247
AGTGATAATAATCTCTCTCTTTTCCATCTG228TTGGTATTGGAACAGGACCTGTTTTGGGAAGATGAAGAGCTTCTCTCTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGGTCCTGTTCCAATACCAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGGTCCTGTTCCAATACCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.387 | 0.379 | search_plus_done; http://172.18.8.135:50400/match?q=AGGTCCTGTTCCAATACCAA&k=0&no_gap=0&offset=0&limit=50
0.587 | 0.200 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGTATTGGAACAGGACCT&k=0&no_gap=0&offset=0&limit=47
0.588 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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