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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:07:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

ndcxd0_0024_H01.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ378708.1:475-494
GGATGCTTTGAATGAAAAATTGAAGGAAGA475AGTGCAACGGCTTAGGATACAAGCTGGTCAAGTGTCTGCTATGAATGGAA
Gossypioides kirkii chromosome KI_03.
CP032246.1:6458786-6458805
TGCAGCTTTGAATGAAAAATTGAAGGAAGA6458786AGTGCAACGGCTTAGGATACAAGCCAGTCAAGTGTCTGCTATGAATGGAA
Gossypium raimondii isolate D5-4 chromosome D5_03.
CP032555.1:54253411-54253430
TGCAGCTTTGAATGAAAAATTGAAGGAAGA54253411AGTGCAACGGCTTAGGATACAAGCTGGTCAAGTGTCTGCTATGAATGGAA
Gossypium turneri isolate D10-2 chromosome D10_03.
CP032573.1:55606786-55606805
TGCAGCTTTGAATGAAAAATTGAAGGAAGA55606786AGTGCAACGGCTTAGGATACAAGCTGGTCAAGTGTCTGCTATGAATGGAA
Gossypium bickii isolate GPG1lz chromosome 3.
CP106710.1:15858760-15858779
TGTAGCTTTGAATGAAAAATTGAAGGAAGA15858760AGTGCAACGGCTTAGGATACAAGCTGGTCAAGTGTCTGCTATGAATGGAA
Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0447 SSR marker CGR5448 genomic sequence.
GQ393482.1:186-205
GGATGCTTTGAATGAAAAATTGAAGGAAGA186AGTGCAACGGCTTAGGATACAAGCTGGTCAAGTGTCTGCTATGAATGGAA
Gossypium herbaceum clone NBRI_B_2579 simple sequence repeat marker, mRNA sequence.
HQ527219.1:91-110
ATGCTTTGAATGAAAAAATTAGAAGGAAGA91AGTGCAACGGCTTAGGATACAAGCTGGTCAAGTGTCTGCTATGAATGGAA
Dicrocoelium dendriticum genome assembly, chromosome: 13.
OX104062.1:48326593-48326612
AGCGTCTACCGCTAACCAGTGTCAACGTCT48326593AGTGCAACGGCTTAGGATACTTTGTGTAACGACTAAAACCAATGGTGTAC
Spisula subtruncata genome assembly, chromosome: 15.
OY787674.1:8637388-8637407
CTGATCAATAAAATATGGTCTAGCAGTTCA8637388AGTGCAACGGCTTAGGATACCTAATAATAAATACTACCTAGATGTGTTCA
GR__Eb0039N03.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0039N03 5', mRNA sequence.
CO108192.1:513-532
TTCCATTCATAGCAGACACTTGACCAGCTT513GTATCCTAAGCCGTTGCACTTCTTCCTTCAATTTTTCATTCAAAGCATCC
GH_RMIRS_072_D10_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW488957.1:175-194
TTCCATTCATAGCAGACACTTGACCAGCTT175GTATCCTAAGCCGTTGCACTTCTTCCTTCAATTTTTCATTCAAAGCATCC
GH_TMIRS_124_A03_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW508404.1:507-526
TTCCATTCATTGCAGACACTTGACCAGCTT507GTATCCTAAGCCGTTGCACTTCTTCCTTCAATTTTTCATTCAAAGCATCC
Gossypium turneri isolate D10-2 chromosome D10_03.
CP032573.1:55601617-55601636
TTCCATTCATAGCAGACACTTGACCAGCTT55601617GTATCCTAAGCCGTTGCACTTCTTCCTTCAATTTTTCATTCAAAGCTGCA
Gossypium herbaceum isolate Zhongcao1 chromosome 3.
CP106685.1:120600965-120600984
TTCCATTCATAGCAGACACTTGACCAGCTT120600965GTATCCTAAGCCGTTGCACTTCTTCCTTCAATTTTTCATTCAAAGCTGCA
Hibiscus tridactylites genome assembly, chromosome: 1.
OY288265.1:17513694-17513713
TTCCATTCATAGCTGACACTTGGCCAGCTT17513694GTATCCTAAGCCGTTGCACTTCTTCCCTCAATGTTTCATGCAAAGCTGCA
Hibiscus tridactylites genome assembly, chromosome: 2.
OY288266.1:17040148-17040167
TTCCATTCATAGCTGACACTTGGCCAGCTT17040148GTATCCTAAGCCGTTGCACTTCTTCCCTCAATTTTTCATGCAAAGCTGCA
Hibiscus tridactylites genome assembly, chromosome: 4.
OY288268.1:72837070-72837089
ATCCATTCACCGCGGACACTTGGCCGGCTT72837070GTATCCTAAGCCGTTGCACTTCTTCCCTCAATTTTTCATGCAAAGCTACA
Hibiscus tridactylites genome assembly, chromosome: 9.
OY288273.1:32818861-32818880
ATCCATTCTCCGCGGACACTTGGCCGGCTT32818861GTATCCTAAGCCGTTGCACTTCTTCCCTCAATTTTTCATGCAAAGCTACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGTGCAACGGCTTAGGATAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTGCAACGGCTTAGGATAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.264 | 0.255 | search_plus_done; http://172.18.8.135:50400/match?q=AGTGCAACGGCTTAGGATAC&k=0&no_gap=0&offset=0&limit=50
0.477 | 0.213 | search_minus_done; http://172.18.8.135:50400/match?q=GTATCCTAAGCCGTTGCACT&k=0&no_gap=0&offset=0&limit=41
0.483 | 0.006 | cgi_end;

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