GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 01:18:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR3A340JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV543634.1:88-109
TATATTACACAACTTCACTTCAACTTAAAC88ATAAAGCTGACCAGATGGGAGATACAGCATCAAACAGTACATCATAAAATTA
RS1B237JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW721424.1:33-54
TATATTACACAACTTCACTTCAACTTAAAC33ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATTA
RR2BM61JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX758582.1:88-109
TATATTACACAACTTCACTTCAACTTAAAC88ATAAAGCTGACCAGATGGGAGAAACAACATCAAACAGTACATCATAAAATTA
RS3DX12JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY944644.1:104-125
TATATTACACAACTTCACTTCAACTTAAAC104ATAAAGCTGACCAGATGGGAGATACAACATCAAAAAGTACATCATAGAATAG
RS2FH17JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD574622.1:103-124
TATATTACACAACTTCACTTCAACTTAAAC103ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATAG
RS2G233JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD576089.1:128-149
TATATTACACGACTTCACTTCAACTTAAAC128ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATAG
RS3F906JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD583128.1:66-87
TATATTACACAACTTCACTTCAACTTAAAC66ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATTA
RS3FR27JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD584423.1:142-163
TATATTACACAACTTCACTTCAACTTAAAC142ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATAG
RR4HA48JQB RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD986022.1:105-126
TATATTACACAACTTCACTTCAACTTAAAC105ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATTA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_11991.
FX658752.1:88-109
TATATTACACAACTTCACTTCAACTTAAAC88ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATTA
TSA: Raphanus sativus RS07230 mRNA sequence.
JT791777.1:87-108
TATATTACACAACTTCACTTCAACTTAAAC87ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATAG
TSA: Raphanus sativus RS07231 mRNA sequence.
JT791778.1:87-108
TATATTACACAACTTCACTTCAACTTAAAC87ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATAG
Raphanus sativus cultivar WK10039 clone RsH011K10, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC255283.1:120664-120685
TATATTACACAACTTCACTTCAACTTAAAC120664ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATTA
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:8655049-8655070
TATATTACACAACTTCACTTCAACTTAAAC8655049ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATTA
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:8655049-8655070
TATATTACACAACTTCACTTCAACTTAAAC8655049ATAAAGCTGACCAGATGGGAGATACAACATCAAACAGTACATCATAAAATTA
RR2BM61TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX754202.1:351-372
TAATTTTATGATGTACTGTTTGATGTTGTT351TCTCCCATCTGGTCAGCTTTATGTTTAAGTTGAAGTGAAGTTGTGTAATATA
RS2G233TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD572446.1:456-477
CTATTTTATGATGTACTGTTTGATGTTGTA456TCTCCCATCTGGTCAGCTTTATGTTTAAGTTGAAGTGAAGTCGTGTAATATA
RS3FR27TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD580677.1:608-629
CTATTTTATGATGTACTGTTTGATGTTGTA608TCTCCCATCTGGTCAGCTTTATGTTTAAGTTGAAGTGAAGTTGTGTAATATA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_17755.
FX738911.1:1665-1686
TAATTTTATGATGTACTGTTTGATGTTGTA1665TCTCCCATCTGGTCAGCTTTATGTTTAAGTTGAAGTGAAGTTGTGTAATATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ATAAAGCTGACCAGATGGGAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ATAAAGCTGACCAGATGGGAGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.858 | 0.849 | search_plus_done; http://172.18.8.135:50400/match?q=ATAAAGCTGACCAGATGGGAGA&k=0&no_gap=0&offset=0&limit=50
1.132 | 0.275 | search_minus_done; http://172.18.8.135:50400/match?q=TCTCCCATCTGGTCAGCTTTAT&k=0&no_gap=0&offset=0&limit=35
1.135 | 0.003 | cgi_end;

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