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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 07:49:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

OL5788F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5788, mRNA sequence.
EH422989.1:119-138
AGGAGGATGTTTTGTGTATTTATGAAGTGA119ATAAGCCCCAATGGTGATCCGACGGCAGAGTTTCCTTGATCTTGTCAAGT
0209471 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV143538.1:145-164
AGGAGGATGTTTTGTGTATTTATGAAGTGA145ATAAGCCCCAATGGTGATCCGACGGCAGAGTTTCCTTGATCTTGTCAAGT
0091388 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV193903.1:87-106
AGGAGGATGTTTTGTGTATTTATGAAGTGA87ATAAGCCCCAATGGTGATCCGACGGCAGAGTTTCCTTGATCTTGTCAAGT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:52940149-52940168
AGGAGGATGTTTTGTGTATTTATGAAGTGA52940149ATAAGCCCCAATGGTGATCCGACGGCAGAGTTTCCTTGATCTTGTCAAGT
Sequence 137405 from Patent WO2008034648.
FB918132.1:1275-1294
ACTTGACAAGATCAAGGAAACTCTGCCGTC1275GGATCACCATTGGGGCTTATTCACTTCATAA
Sequence 137405 from Patent EP2090662.
HB788191.1:1275-1294
ACTTGACAAGATCAAGGAAACTCTGCCGTC1275GGATCACCATTGGGGCTTATTCACTTCATAA
82-E023406-021-020-C22-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022C2220Q, mRNA sequence.
CX188807.1:560-579
ACTTGACAAGATCAAGGAAACTCTGCCGTC560GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-059D09, 3' end sequence.
DK537775.1:626-645
ACTTGACAAGATCAAGGAAACTCTGCCGTC626GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-078D11, 3' end sequence.
DK545043.1:637-656
ACTTGACAAGATCAAGGAAACTCTGCCGTC637GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-092E07, 3' end sequence.
DK550416.1:573-592
ACTTGACAAGATCAAGGAAACTCTGCCGTC573GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica oleracea var. viridis mRNA, clone: KALE-112P11, 3' end sequence.
DK558325.1:641-660
ACTTGACAAGATCAAGGAAACTCTGCCGTC641GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
OL5788R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5788, mRNA sequence.
EH422992.1:363-382
ACTTGACAAGATCAAGGAAACTCTGCCGTC363GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
EST6998 11-19 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B374E071, mRNA sequence.
EL629490.1:540-559
CTTGATAAGATCACTGAAACTCTGGCATCG540GGATCACCATTGGGGCTTATCAACTTTATAAA
BNARO1GH_T3_022_D03_23NOV2006_025 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES901419.1:507-526
ACTTGATAAGATCAAGGAAACTCTGCCATC507GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
BNSCS4CT_UP_173_D11_25MAY2007_089 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV071758.1:71-90
ACTTGACAAGATCAAGGAAACTCTGCCGTC71GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5356.
FX699080.1:1509-1528
ACTTGACAAGATCAAGGAAACTCTTCCATC1509GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_7303.
FX733383.1:1474-1493
ACTTGACAAGATCAAGGAAACTCTTCCATC1474GGATCACCATTGGGGCTTATTCATTTCATAAATACACAAAACAGCCTCCT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:6592089-6592108
ACTTGATAAGATCAAGGAAACTCTGCCATC6592089GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:5542089-5542108
ACTTGATAAGATCAAGGAAACTCTGCCATC5542089GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:6388240-6388259
ACTTGACAAGATCAAGGAAACTCTGCCGTC6388240GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica rapa genome, scaffold: A06.
LR031569.1:5442109-5442128
ACTTGATAAGATCAAGGAAACTCTGCCATC5442109GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:6202998-6203017
ACTTGACAAGATCAAGGAAACTCTGCCGTC6202998GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACATCCTCCT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:5545487-5545506
ACTTGATAAGATCAAGGAAACTCTGCCATC5545487GGATCACCATTGGGGCTTATTCACTTCATAAATACACAAAACAGCCTCCT
Nasturtium officinale genome assembly, chromosome: 2.
OY978500.1:4050930-4050949
ACTTGAAAAGATCAAGGAAACTCTACCATC4050930GGATCACCATTGGGGCTTATTCACTTCATAAAACACCAAATGCGTATTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATAAGCCCCAATGGTGATCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATAAGCCCCAATGGTGATCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.339 | 0.330 | search_plus_done; http://172.18.8.135:50400/match?q=ATAAGCCCCAATGGTGATCC&k=0&no_gap=0&offset=0&limit=50
0.875 | 0.537 | search_minus_done; http://172.18.8.135:50400/match?q=GGATCACCATTGGGGCTTAT&k=0&no_gap=0&offset=0&limit=46
0.888 | 0.012 | cgi_end;

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