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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 08:58:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

020904AARA012561HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA012561, mRNA sequence.
CN877992.1:499-519
GGCACTTCACATTGATCCAGGTCACGCACC499ATCTAAATGGGCAACATGCAGTGATGTGGTAAATATGACTTGGAAGGATTC
030203ABPB003617HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB003617, mRNA sequence.
CN917946.1:463-483
GGCACTTCACATTGATCCAGGTCACGCACC463ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC
020801AVBC010057HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC010057, mRNA sequence.
CN946788.1:393-413
GGCACTTCACATTGATCCAGGTCACGCACC393ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC
ff_07A04_AA5 Md_fruit-fruit_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254831.1:1-21
1ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC
Mdfws2070E21.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-MII.2) gb|AAB31590.1| CP-MII.2=serine carboxypeptidase [Hordeum vulga
GO509960.1:159-179
GGCACTTCACGTTGATCCAGGTCACGCACC159ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC
Mdfrfu3512E14.g1 Apple_EST_Mdfrfu Malus domestica cDNA 5' similar to sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-MII.2) gb|AAB31590.1| CP-MII.2=serine carboxypeptidase [Hordeum vul
GO535368.1:33-53
AATTCCGTTGCTGTCGTTTTTTTACGCACC33ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACTTGGAAGGATTC
Mdfwj2081G22.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to ref|NP_567854.1| serine carboxypeptidase -related [Arabidopsis thaliana] gb|AAK93635.1| putative serine carboxypeptidase II [Arabidop
GO543294.1:166-186
GGCACTTCACGTTGATCCAGGTCACGCACC166ATCTAAATGGGCAACATGCAGTGATGTGGTAAGTATGACCTGGAAGGATTC
TSA: Pyrus communis mRNA, contig: lc2672.
FX611259.1:12-32
GATCACGCACC12ATCTAAATGGGCAACATGCAGTGATGTGGTAGGTATGACTTGGAAGGATTC
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:11128195-11128215
GGCACTTCACGTTGATCCAGGTCACGCACC11128195ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:10086837-10086857
GGCACTTCACGTTGATCCAGGTCACACACC10086837ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:10862532-10862552
GGCACTTCACGTTGATCCAGGTCACGCACC10862532ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:11087687-11087707
GGCACTTCACGTTGATCCAGGTCACGCACC11087687ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:11154473-11154493
GGCACTTCACGTTGATCCAGGTCACGCACC11154473ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:11103735-11103755
GGCACTTCACGTTGATCCAGGTCACGCACC11103735ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:10891807-10891827
GGCACTTCACGTTGATCCAGGTCACGCACC10891807ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT
Geum urbanum genome assembly, chromosome: 1.
OX326997.1:433731-433751
GGCCCTTCATGTTGATCAACGTCATTCACC433731ATCTAAATGGGCAACATGCAGGTATAACAGACTATCTCTTCTCAGTGTCTT
Rosa rugosa genome assembly, chromosome: 1.
OY288191.1:591792-591812
GGCCCTTCATGTTGATCGACACCATGCACC591792ATCTAAATGGGCAACATGCAGGTATAACTCAATCTCTTATCTCTCTTCCAT
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:9246409-9246429
GGCACTTCATGTTGATCCAGATCACGCACC9246409ATCTAAATGGGCAACATGCAGGTAATCAGTTGAAAAAAGTGCTTCATGCTT
TSA: Pyrus x bretschneideri Unigene80831_XinShao mRNA sequence.
JR665355.1:370-390
GAATCCTTCCAAGTCATACTTACCACATCA370CTGCATGTTGCCCATTTAGATGGTGCGTGATCTGGATCAACGTGAAGTGCC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:41759703-41759723
AAGCAAGAAGCACTTTTTTCAACTGATTAC41759703CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:45355121-45355141
AAGCATGAAGCACTTTTTTCAACTGATTAC45355121CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:41384117-41384137
AAGCATGAAGCACTTTTTTCAACTGATTAC41384117CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:42376301-42376321
AAGCATGAAGCACTTTTTTCAACTGATTAC42376301CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:41379209-41379229
AAGCATGAAGCACTTTTTTCAACTGATTAC41379209CTGCATGTTGCCCATTTAGATGGTGCGTGACCTGGATCAACGTGAAGTGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATCTAAATGGGCAACATGCAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATCTAAATGGGCAACATGCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.757 | 0.748 | search_plus_done; http://172.18.8.135:50400/match?q=ATCTAAATGGGCAACATGCAG&k=0&no_gap=0&offset=0&limit=50
0.886 | 0.128 | search_minus_done; http://172.18.8.135:50400/match?q=CTGCATGTTGCCCATTTAGAT&k=0&no_gap=0&offset=0&limit=32
0.890 | 0.004 | cgi_end;

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