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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:47:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Tetrao urogallus genome assembly, chromosome: 6.
OX596300.1:685253-685272
AAATATCAGTGAATGCCACCACAAGCAAGC685253ATGCAGTTGAGGACAAAAAGGCGACTCAGTTTATGTTTGTACACAGCCAC
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:29178841-29178860
CGGATGCGCAAGAGATGACAGTGTGTTTGT29178841ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGACCAGGAAAT
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:25663855-25663874
CGGACGCGCAAGAGATGACAGTATGTTTGT25663855ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGACCAGGAAAT
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:27717125-27717144
CGGATGCGCAAGAGATGACAGTGTGTTTGT27717125ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGGGGGGGGGAC
Malus domestica genome assembly, chromosome: 14.
OU696690.1:28983925-28983944
CGGATGCGCAAGAGATGACAGTGTGTTTGT28983925ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGACCAGGAAAT
Malus domestica genome assembly, chromosome: 14.
OU744966.1:29738183-29738202
CGGATGCGCAAGAGATGACAGTGTGTTTGT29738183ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGGACCAGGAAA
Malus domestica genome assembly, chromosome: 14.
OU745004.1:29617433-29617452
CGGATGCGCAAGAGATGACAGTGTGTTTGT29617433ATGCAGTTGAGGACAAAAAGGAGGGGTGGGGGGGGGGGGGGACCAGGAAA
Pipistrellus pygmaeus genome assembly, chromosome: 2.
OX465303.1:38430174-38430193
TAGCTTTTTGCTGGCCCATAGCGCCCACCT38430174CTTTTTGTCCTCAACTGCATGATGTGAGCGAAGGGTGTGTATCTTCTCAG
Gallus gallus breed Huxu chromosome 7.
CP100561.1:25033563-25033582
TTACTTAGATAATCCAATCTTTAATTCTGC25033563CTTTTTGTCCTCAACTGCATGTGTTATTCAGAACTAAACTGAGATCTTTC
Geotrypetes seraphini genome assembly, chromosome: 1.
LR699146.1:319025962-319025981
CTTTCCTAATAATTGCTAACATCCTGTTTG319025962CTTTTTGTCCTCAACTGCATATTGGACAGAAGATTTCAGCAAATTTTCTA
Rana temporaria genome assembly, chromosome: 3.
LR991682.1:443194758-443194777
CTTTTTCCCTTTTTTAGAAGTAGTCATATT443194758CTTTTTGTCCTCAACTGCATGAGAGCTGGGAGGGGGAGAAACAGCAGTAC
EG-F01_004_D11 Oil palm female inflorescence Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600805.1:180-199
CTCTCTCTCTCTTCCTTCCTCTTCCTTTGG180CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
OPSC01654 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 865_2-T3.seq, mRNA sequence.
EL689876.1:181-200
CTCTCTCTCTCTTCCTTCCTCTTCCTTTGG181CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
OPR04556 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A4246A.seq, mRNA sequence.
EL694493.1:198-217
CTCTCTTTCTCTTCCTTCCTCTTCCTTTGG198CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
OPR04557 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A4246B.seq, mRNA sequence.
EL694494.1:195-214
CTCTCTTTCTCTTCCTTCCTCTTCCTTTGG195CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
pOP-CNI01615_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI01615 5', mRNA sequence.
EY403513.1:27-46
CTCTCTCTTCCTTCCTCTTCCTTTGG27CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
pOP-CNIP00173_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00173 5', mRNA sequence.
EY404145.1:27-46
CTCTCTCTTCCTTCCTCTTCCTTTGG27CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
pOP-EO02677_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02677 5', mRNA sequence.
EY409183.1:180-199
CTCTCTCTCTCTCTCTCCCTCTTCCTTTGG180CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
pOP-EO02206_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02206 5', mRNA sequence.
EY412853.1:179-198
CTCTCTCTCTCTCTCTCCCTCTTCCTTTGG179CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
Elaeis guineensis EST, clone (6lib)_isotig03067.
LM615269.1:1261-1280
CTCTCTTTCTCTTCCTTCCTCTTCCTTTGG1261CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
TSA: Elaeis guineensis isotig03536.Elguifruit mRNA sequence.
JO090790.1:81-100
CTCTCTCTCTCTCTCTCCCTCTTCCTTTGG81CTTTTTGTCCTCAACTGCATGGATCGCTTGTGACCTATAAGCCGCCGTCG
CH261-17A2_RM1.1 CH261 Gallus gallus genomic clone CH261-17A2, genomic survey sequence.
CC250772.1:378-397
TTACTTAGATAATCCAATCTTTAATTCTGC378CTTTTTGTCCTCAACTGCATGTGTTATTCAGAACTAAACAGATCTTTCTG
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:2668888-2668907
ATTTCCTGGTCCCCCCCCCCCCCACCCCTC2668888CTTTTTGTCCTCAACTGCATACAAACACACTGTCATCTCTTGCGCATCCG
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:2701535-2701554
TTTCCTGGTCCCCCCCCCCCCCCACCCCTC2701535CTTTTTGTCCTCAACTGCATACAAACACACTGTCATCTCTTGCGCATCCG
Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:2717508-2717527
CCTTGCATTTCCTGGTCACCCCCACCCCTC2717508CTTTTTGTCCTCAACTGCATACAAACATACTGTCATCTATTGCGCATCCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGCAGTTGAGGACAAAAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGCAGTTGAGGACAAAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.285 | 0.277 | search_plus_done; http://172.18.8.135:50400/match?q=ATGCAGTTGAGGACAAAAAG&k=0&no_gap=0&offset=0&limit=50
1.065 | 0.779 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTTTGTCCTCAACTGCAT&k=0&no_gap=0&offset=0&limit=43
1.077 | 0.012 | cgi_end;

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