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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-18 13:36:27, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Myotis mystacinus genome assembly, chromosome: 1.
OZ065553.2:175594602-175594621
GCACAGAGTGCTGTGGAAGACAAACTTGAG175594602ATGTGTTGCCAAAATGCAGAGGGAAAGGACAATGGAATGATGATAGCATA
Myotis mystacinus genome assembly, chromosome: 1.
OZ077851.1:173519265-173519284
GCACAGATTGCTGTGGAAGACAAACTTGAG173519265ATGTGTTGCCAAAATGCAGAGGGAAAGGACAATGGAATGATGATAGCATA
Halichoerus grypus genome assembly, chromosome: 9.
OZ210068.1:122642881-122642900
CACATTAGGAACCTGAGGCTTAACTAAAAA122642881ATGTGTTGCCAAAATGCAGATAACACAGCCCTAACATTTGCATAATTGGA
Ranunculus sceleratus genome assembly, chromosome: 8.
OZ205670.1:164247291-164247310
TACGACCTTACGAAAACAGCATCAACAAAG164247291ATGTGTTGCCAAAATGCAGAATAATAGCACTCAAATGTGGTGCTCACATA
Lepidochitona cinerea genome assembly, chromosome: 1.
OZ020551.1:96970066-96970085
CTCTTTTTGTGTATCTAGACTTGAGTTAGC96970066ATGTGTTGCCAAAATGCAGATATTTTTCTGTTTAAACAAATTTATCGGCT
Azelia nebulosa genome assembly, chromosome: 1.
OZ174196.1:51297407-51297426
AAAAATTTATGAAAATCTGTGGTCGGAATC51297407ATGTGTTGCCAAAATGCAGATCAGACAGCATATAAACACCTAGCTATATA
Myotis daubentonii genome assembly, chromosome: 21.
OY725380.1:14559533-14559552
ATCCAGACTTTGGTGCGAAGTCGCCTGACT14559533TCTGCATTTTGGCAACACATTCAAACGTGCCTCTAGCTCAGTGGTTCTCA
Myotis nattereri genome assembly, chromosome: 21.
OZ125697.1:13308384-13308403
ATCCAGACTTTGGTGCGAAGTCGCCTGACT13308384TCTGCATTTTGGCAACACATTCAAACGTGCCTCTAGCTCAGTGGTTCTCA
Myotis emarginatus genome assembly, chromosome: 1.
OZ220647.1:56545998-56546017
TATGCTATCATCATTCCATTGTCCTTTCCC56545998TCTGCATTTTGGCAACACATCTCAAGTTTGTCTTCCACAGCACTCTGTGC
Warburgia ugandensis isolate CL-2023a chromosome 8.
CP141133.1:4487049-4487068
TTCTATCATTTCTTATATTGCTACTCAACA4487049TCTGCATTTTGGCAACACATCATATATACATGTTGTTCCTTAACAGCCTA
Santalum album isolate Sal_t2t chromosome 2.
CP159899.1:10704892-10704911
GGCCACTGTAAGAACAGGTGATCGTTCATC10704892TCTGCATTTTGGCAACACATTATAACACATTTGGAGATATAGCTTTGTGT
Stomoxys calcitrans genome assembly, chromosome: 4.
OY720438.1:7176385-7176404
TATTGTTTAAGGAAGTTTTTTAAGGAGTTG7176385TCTGCATTTTGGCAACACATTTCTACTTCACAATCGTTGATTTCAGGAGC
Azelia nebulosa genome assembly, chromosome: 2.
OZ174197.1:73727597-73727616
TATATAGCTAGGTGTTTATATGCTGTCTAA73727597TCTGCATTTTGGCAACACATGATTCCGACCACAGATTTTCATAAATTTTT
Larinioides cornutus genome assembly, chromosome: 8.
OZ204537.1:146531311-146531330
AATAATATGAAATTTTGGAAGACAAAATTT146531311TCTGCATTTTGGCAACACATGATTAACAGAGTGGAATAGGGATCAGAGAT
Echinaster sepositus genome assembly, chromosome: 1.
OZ209000.1:42176605-42176624
GTGCCAAAAAATTAGAAAATGTCAATCTTA42176605TCTGCATTTTGGCAACACATAAGACCCTGCAATTATCCACAAGGTATAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGTGTTGCCAAAATGCAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGTGTTGCCAAAATGCAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.233 | 0.224 | search_plus_done; http://172.18.8.135:50800/match?q=ATGTGTTGCCAAAATGCAGA&k=0&no_gap=0&offset=0&limit=50
0.335 | 0.102 | search_minus_done; http://172.18.8.135:50800/match?q=TCTGCATTTTGGCAACACAT&k=0&no_gap=0&offset=0&limit=44
0.341 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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