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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:06:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_28305.
FX708402.1:164-183
TCAGCATTAGGGTTTGTAGTCCAAGAACTC164ATGTTTCCGACCACATTTGCTCCGAACATCTTCGGACCATCTTGAGGCAA
Brassica rapa subsp. pekinensis clone KBrB126H02, complete sequence.
CU928182.1:3349-3368
TCAGCATTAGGGTTTGTAGTCCAAGAACTC3349ATGTTTCCGACCACATTTGCTCCGAACATCTTCGGACCATCTTGAGGCAA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:6813655-6813674
TCAGCATTAGGGTTTGTAGTCCAAGAACTC6813655ATGTTTCCGACCACATTTGCTCCGAACATCTTCGGACCATCTTGAGGCAA
Brassica napus aintegumenta 2 mRNA, complete cds.
DQ211970.1:1576-1595
TTGCCTCAAGATGGTCCGAAGATGTTCGGA1576GCAAATGTGGTCGGAAACATGAGTTCTTGGACTACAAACCCTAATGCTGA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:19691657-19691676
TTGCCTCAAGATGGTCCGAAGATGTTCGGA19691657GCAAATGTGGTCGGAAACATGAGTTCTTGGACTACAAACCCTAATGCTGA
Brassica rapa genome, scaffold: A08.
LR031575.1:18673930-18673949
TTGCCTCAAGATGGTCCGAAGATGTTCGGA18673930GCAAATGTGGTCGGAAACATGAGTTCTTGGACTACAAACCCTAATGCTGA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:24412337-24412356
TTGCCTCAAGATGGTCCGAAGATGTTCGGA24412337GCAAATGTGGTCGGAAACATGAGTTCTTGGACTACAAACCCTAATGCTGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGTTTCCGACCACATTTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGTTTCCGACCACATTTGC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.159 | 0.150 | search_plus_done; http://172.18.8.135:50400/match?q=ATGTTTCCGACCACATTTGC&k=0&no_gap=0&offset=0&limit=50
0.262 | 0.103 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAATGTGGTCGGAAACAT&k=0&no_gap=0&offset=0&limit=47
0.265 | 0.003 | cgi_end;

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