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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 18:58:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solea solea genome assembly, chromosome: 3.
OY282536.1:3558606-3558625
CAGTAACTCCCAGACTGTGATATCTCGAAA3558606ATTGCTGAGATTGGCTCAGGCAATATAATATCTCAAACAATATTATATGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_297.
FX694242.1:2187-2206
ACGGTGTCGAATCTCGCATAGGTCGACGAC2187ATTGCTGAGATTGGCTCAGGCCGCGAGTATTGGTACTCGGGAAAGAGTG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_582.
FX727689.1:2070-2089
ACGGTGTCGAATCTCGCATAGGTCGACGAC2070ATTGCTGAGATTGGCTCAGGCCGCGAGTATTGGTACTCGGGAAAGTGTGC
Brassica napus genome assembly, chromosome: A10.
HG994364.1:8311757-8311776
ACGGTGTCGAATCTCGCATAGGTCGACGAC8311757ATTGCTGAGATTGGCTCAGGCCGCGAGTATTGGTACTCGGGAAAGTGTGC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:39740664-39740683
ACGGTGTCGAATCTCGCATAGGTCGACGAC39740664ATTGCTGAGATTGGCTCAGGCGGCGAGTATCGATACTCGGGGAAAGTGTG
Brassica rapa genome, scaffold: A10.
LR031577.1:5278627-5278646
ACGGTGTCGAATCTCGCATAGGTCGACGAC5278627ATTGCTGAGATTGGCTCAGGCCGCGAGTATTGGTACTCGGGAAAGTGTGC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:38903403-38903422
ACGGTGTCGAATCTCGCATAGGTCGACGAC38903403ATTGCTGAGATTGGCTCAGGCGGCGAGTATCGATACTCGGGGAAAGTGTG
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:8027072-8027091
ACGGTGTCGAATCTCGCATAGGTCGACGAC8027072ATTGCTGAGATTGGCTCAGGCCGCGAGTATTGGTACTCGGGAAAGTGTGC
Telmatherina bonti genome assembly, chromosome: 12.
OW121832.1:32956794-32956813
GGATGGATGGATGGATGAGTCACATTAAAG32956794CCTGAGCCAATCTCAGCAATTAGCAGGCAAGAGGTAGGGTACACTCCGGA
Brassica oleracea var. viridis mRNA, clone: KALE-069B17, 5' end sequence.
DK481965.1:36-55
CACACTTTCCCCGAGTATCGATACTCGCCG36CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
Brassica oleracea var. viridis mRNA, clone: KALE-078D24, 5' end sequence.
DK485464.1:89-108
CACACTTTCCCCGAGTATCGATACTCGCCG89CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
Brassica oleracea var. viridis mRNA, clone: KALE-121B05, 5' end sequence.
DK501849.1:36-55
CACACTTTCCCCGAGTATCGATACTCGCCG36CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
23FGYLD_UP_002_C11_01FEB2004_091 Brassica napus 23FGYLD Brassica napus cDNA 5', mRNA sequence.
DY030496.1:96-115
CACACTTTCCCCGAGTATCGATACTCGCCG96CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
31ETGS12_UP_007_G02_11MAR2004_004 Brassica napus 31ETGS12 Brassica napus cDNA 5', mRNA sequence.
EE424078.1:71-90
CACACTTTCCCCGAGTATCGATACTCGCCG71CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
76ETGS72_UP_017_C11_21MAY2005_091 76ETGS72 Brassica napus cDNA 5', mRNA sequence.
EE450747.1:94-113
CACACTTTCCCCGAGTATCGATACTCGCCG94CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
37RDBRH_UP_010_D10_29MAR2004_074 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE522961.1:6-25
GGCGG6CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
48RDOAM_UP_076_F05_04FEB2006_037 Brassica oleracea 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
ES945060.1:87-106
CACAGTTTCCCCGAGTATCGATACTCGCCG87CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
0104152 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV202999.1:90-109
GCACACTTTCCCGAGTACCAATACTCGCGG90CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
KBrB004G10F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB004G10, genomic survey sequence.
DX013252.1:166-185
GCACACTTTCCCGAGTACCAATACTCGCGG166CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
Brassica napus partial mRNA for plastidial phosphoglucomutase.
AJ250771.1:7-26
TCGCCG7CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:12449895-12449914
GCACACTTTCCCGAGTACCAATACTCGCGG12449895CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:25463084-25463103
CACACTTTCCCCGAGTATCGATACTCGCCG25463084CCTGAGCCAATCTCAGCAATGTCGTCGACCTATGCGAGATTCGACACCGT
Brassica rapa subsp. chinensis clone D2 microsatellite sequence.
DQ407199.1:82-101
GCACACTTTCCCGAGTACCAATACTCGCGG82CCTGAGCCAATCTCAGCAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTGCTGAGATTGGCTCAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTGCTGAGATTGGCTCAGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.419 | 0.410 | search_plus_done; http://172.18.8.135:50400/match?q=ATTGCTGAGATTGGCTCAGG&k=0&no_gap=0&offset=0&limit=50
1.086 | 0.668 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGAGCCAATCTCAGCAAT&k=0&no_gap=0&offset=0&limit=42
1.096 | 0.010 | cgi_end;

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