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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 20:40:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Dianthus caryophyllus mRNA, clone: CES07N09, 5' end sequence.
FY385060.1:430-449
TGCCGCTGCTGCCCGACGACTCGGAAACAT430GCGTTGTCGGTCTTGAAAATGAGATGAGAGCAAAAGGGTTAAACCTTGTT
Dianthus caryophyllus mRNA, clone: CES09J16, 5' end sequence.
FY385732.1:432-451
TGCCGCTGCTGCCCGACGACTCGGAAACAT432GCGTTGTCGGTCTTGAAAATGAGATGAGAGCAAAAGGGTTAAACCTTGTT
Dianthus caryophyllus mRNA, clone: CFES21N24, 5' end sequence.
FY402020.1:536-555
TGCCGCTGCTGCCCGACGACTCGGAAACAT536GCGTTGTCGGTCTTGAAAATGAGATGAGAGCAAAAGGGTTAAACCTTGTT
TSA: Dianthus caryophyllus mRNA, contig: CAK09.613.C1.
FX297774.1:535-554
TGCCGCTGCTGCCCGACGACTCGGAAACAT535GCGTTGTCGGTCTTGAAAATGAGATGAGAGCAAAAGGGTTAAACCTTGTT
Melitaea cinxia chromosome 9.
CP049656.1:1312407-1312426
TTAAGTATTTGTATTGTTTACATATATTTT1312407GCGTTGTCGGTCTTGAAAATGCCTTTGACGTTTGAAAGTTTTCTTGTCTA
Melitaea cinxia genome assembly, chromosome: 5.
HG992214.1:1421277-1421296
TTAAGTATTTGTATTGTTTACATATCTTTT1421277GCGTTGTCGGTCTTGAAAATGCCTTTGACGTTTGAAAGTTTTCTTATCTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTTTCAAGACCGACAACGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTTTCAAGACCGACAACGC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.220 | 0.211 | search_plus_done; http://172.18.8.135:50400/match?q=ATTTTCAAGACCGACAACGC&k=0&no_gap=0&offset=0&limit=50
0.584 | 0.364 | search_minus_done; http://172.18.8.135:50400/match?q=GCGTTGTCGGTCTTGAAAAT&k=0&no_gap=0&offset=0&limit=50
0.588 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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