GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:51:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KS13036H03 KS13 Capsicum annuum cDNA, mRNA sequence.
GD054945.1:103-122
TTTTCATTCTTTCTTTACACCTTGGTTTCT103ATTTTGATGCGTTGCTTTCCTATTAGGACGGTTGAACTTTCTTCTTTATG
KS20005C10 KS20 Capsicum annuum cDNA, mRNA sequence.
GD093760.1:31-50
GCACGAGGCTTTCTTTACACCTTGGTTTCT31ATTTTGATGCGTTGCTTTCCTATTAGGACGGTTGAACTTTCTTCTTTATG
TSA: Capsicum annuum MACs80_10827, mRNA sequence.
JW171918.1:177-196
TTTTCATTCTTTCTTTACACCTTGGTTTCT177ATTTTGATGCGTTGCTTTCCTATTAGGACGGTTGAACTTTCTTCTTTATG
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:230978361-230978380
TTTTCATTCTTTCTTTAGAATTTGGTTTCT230978361ATTTTGATGCGTTGCTTTCCTGTTAGTACTGTTGGACTTTCTTTTTAATG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 10.
CP124710.1:84208286-84208305
CATTGCAGGTATATTTAGATTTTGGTTTCT84208286ATTTTGATGCGTTGCTTTCCTATTAGGACTATTGAACTTTCTTGAGACAT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 3.
CP124717.1:2154707-2154726
CATTGCAGGTTTCTTTAGACTTTGATTTCT2154707ATTTTGATGCGTTGCTTTCCTATTAAGACGGTTGAACTTTCTTGAGATAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:195723560-195723579
TTTTCATTCTTTCTTTAGAATTTGGTTTCT195723560ATTTTGATGCGTTGCTTTCCTGTTAGGACTGTTGGACTTTCTTCTTAATG
TSA: Capsicum annuum MGMT_Contig40773 mRNA sequence.
JW091017.1:1873-1892
CATAAAGAAGAAAGTTCAACCGTCCTAATA1873GGAAAGCAACGCATCAAAATAGAAACCAAGGTGTAAAGAAAGAATGAAAA
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:59139757-59139776
CATTAAGAAGAAAGTCCAACAGTCCTAACA59139757GGAAAGCAACGCATCAAAATAGAAACCAAATTCTAAAGAAAGAATGAAAA
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:157191404-157191423
CATAAAGAAGAAAGTTCAACCGTCCTAATA157191404GGAAAGCAACGCATCAAAATAGAAACCAAGGTGTAAAGAAAGAATGAAAA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:137026792-137026811
CATAAAGAAGAAAGTCCAACAGTCCTAATA137026792GGAAAGCAACGCATCAAAATAGAAACCAAAGTCTAAAGAAAGAATGAAAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:170002171-170002190
CATAAAGAAGAAAGTTCAACCGTCCTAATA170002171GGAAAGCAACGCATCAAAATAGAAACCAAGGTGTAAAGAAAGAATGAAAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 4.
CP124728.1:21908490-21908509
CATTAAAAAGAAAGTCCAACAGTACTAACA21908490GGAAAGCAACGCATCAAAATAGAAACCAAATTCTAAAGAAAGAATGAAAA
Opisthograptis luteolata genome assembly, chromosome: 18.
OV928051.1:280157-280176
GGGCTACACAATGTCTTTCAAGATGGGCGA280157GGAAAGCAACGCATCAAAATATTAAACGTTAATCTATTAATTATTAATGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTTTGATGCGTTGCTTTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTTTGATGCGTTGCTTTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.336 | 0.327 | search_plus_done; http://172.18.8.135:50400/match?q=ATTTTGATGCGTTGCTTTCC&k=0&no_gap=0&offset=0&limit=50
0.458 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAAGCAACGCATCAAAAT&k=0&no_gap=0&offset=0&limit=43
0.462 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).