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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:24:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Muscardinus avellanarius genome assembly, chromosome: 22.
OY726579.1:15914558-15914576
GGAGGCGGAGACAGGAGGATCCCACAGATT15914558CAAAGCCAGCCATTCTCCTCCCCCCCCCCAAAAAAAGTATAAAATAGGT
Sequence 1665 from patent US 8937215.
HK372303.1:18-36
TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
Sequence 1665 from patent US 9574200.
KH564857.1:18-36
TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
Sequence 1665 from patent US 10227607.
MM771856.1:18-36
TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
Sequence 1665 from patent US 10883115.
MX198022.1:18-36
TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
Sequence 1665 from patent US 11530418.
OO986533.1:18-36
TCGACCCACGCGTCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
USDA-FP_117000-772 Immature Ovaries from field collected Flying Dragon Trifoliate Orange Citrus trifoliata cDNA clone TFF-24_H12 5', mRNA sequence.
CF419831.1:4-22
GTC4CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT
CGF1004540_A01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A01 5', mRNA sequence.
CK934214.1:24-42
GGGGATTCAATCTTTAATTCTTC24CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
CGF1004259_F07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F07 5', mRNA sequence.
CK934391.1:24-42
GGGGATTCAATCTTTAATTCTTC24CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT
CS00-C1-100-012-E04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY650574.1:12-30
CCACGCGTCCG12CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT
CS00-C1-100-124-D02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY656764.1:20-38
CCACGCGTCCGAATTCTTC20CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
CS00-C1-101-014-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY659755.1:14-32
CCACGCGTCCGTC14CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT
CS00-C3-701-037-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY704853.1:52-70
AGAGGCGCTCCATTCAATCTTTAATTCTTC52CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
CS00-C3-702-030-B12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY713371.1:13-31
CCACGCGTCCGC13CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
CS00-C3-705-071-D12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY742482.1:1-19
1CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT
CR05-C1-100-003-F09-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY758413.1:18-36
ACCCACGCGTCCGCTTC18CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
CR05-C1-102-064-B09-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY772336.1:44-62
GTCGGATTCCGGGTCGACCCACGCGTCCGC44CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
CG32-C1-003-091-B03-CT.F Mexican lime leaf, greenhouse plant Citrus aurantiifolia cDNA, mRNA sequence.
EY857987.1:213-231
GGTATTGAACAAGTTGCTGTATAATTCTTC213CAAAGCCAGCCATTCTCCTCGTCCTTTATCTTCTCCTCTTCATTAAACT
LT33-C1-003-003-C06-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY878670.1:2-20
C2CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
C31402G04EF CTVClemen1 Citrus clementina cDNA clone C31402G04, mRNA sequence.
FC875330.1:21-39
GATTCAATCTTTAATTCTTC21CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACT
TSA: Porites australiensis mRNA, contig: Pau-assembly_27992.
FX463223.1:1157-1175
AAGAGGATATAGCAGCAAAAGTAAATGTAC1157CAAAGCCAGCCATTCTCCTCTGCAATTGCAGCCACAAGCTCCGGAAATC
Citrus unshiu putative GDP-mannose-3,5-epimerase mRNA, complete cds.
HQ224947.1:20-38
ATTCAATCTTTAATTCTTC20CAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTTCATTAAAC
Macrobrachium nipponense isolate FS-2020 chromosome 4.
CP062050.1:25290460-25290478
TCTGGCTTTTCTCTCAAACCAACTTACACA25290460CAAAGCCAGCCATTCTCCTGTTTTGCTGTTCGAACAGACTTCAAGCCTT
Sciurus carolinensis genome assembly, chromosome: 15.
LR738605.1:50638083-50638101
CCGGAGAAGGTTTTGTCACAGGAGGACAAG50638083AGGAGAATGGCTGGCTTTGGCATTGCCATGGATGCACAGTCCTAACCTG
Apteryx australis mantelli genome assembly, scaffold: scaffold390.
LK064987.1:1597987-1598005
ACCATCCTGGTCTGTCGTGGGCCTGACCCG1597987AGGAGAATGGCTGGCTTTGCAGGCAGCGATCAAAGGAGCACCTTTTCCT
Apteryx australis mantelli genome assembly, scaffold: scaffold390.
LK064987.1:1601434-1601452
ACCATCCTGGTCTGTCGTGGGCCTGACCCG1601434AGGAGAATGGCTGGCTTTGCAGGCAGCGATCAAAGGAGCACCTTTTCCT
Echeneis naucrates genome assembly, chromosome: 4.
LR584045.1:12663384-12663402
ATTCATACAAAATAATCTCACATGAAGACA12663384AGGAGAATGGCTGGCTTTGGGGATAAAGAAAGGAGGTGGGTAGGAGATG
Nannobrachium achirus genome assembly, chromosome: 5.
OY997642.1:10934183-10934201
AACAAGATCAGGGACGGAATGGGCTTTCTC10934183AGGAGAATGGCTGGCTTTGCCCTCAGCGATAGCAAGTAGACTTGCTGCT
Symbiodinium minutum DNA, clone: SYMB2-026G02, reverse.
GA411430.1:118-136
TTTTGTGAGAATTCTTCTTTGGATTTTTCA118AGGAGAATGGCTGGCTTTGGTACATTTACTTTTGCTGTAATCAGCTCAG
Symbiodinium minutum DNA, clone: SYMB2-041C04, forward.
GA422501.1:118-136
TTTTGTGAGAATTCTTCTTTGGATTTTTCA118AGGAGAATGGCTGGCTTTGGTACATTTACTTTTGCTGTAATCAGCTCAG
Symbiodinium minutum DNA, clone: SYMB2-080K08, reverse.
GA452124.1:118-136
TTTTGTGAGAATTCTTCTTTGGATTTTTCA118AGGAGAATGGCTGGCTTTGGTACATTTACTTTTGCTGTAATCAGCTCAG
Allium cepa genome assembly, chromosome: 5.
LR994633.1:40553962-40553980
CTATAATTGTAACCATATGGGGCATATGAA40553962AGGAGAATGGCTGGCTTTGGCAAGGAACCGAAGGTGTGTTATTTATTTT
Astragalus glycyphyllos genome assembly, chromosome: 2.
OY754308.1:41868772-41868790
TGCTTCTTAACATGGTTATTATGTCTCACG41868772AGGAGAATGGCTGGCTTTGGATGGGGGATCAGTCAGAGATCTTTTCGGT
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:16993887-16993905
GTTTAATGAAAGAGGAGAAGATAAAGGAGG16993887AGGAGAATGGCTGGCTTTGGAAGAATTAAAGATTGAATGGAGCGCCTCT
Agriopis leucophaearia genome assembly, chromosome: 5.
OX421266.1:3257579-3257597
CTGTCACATCAAATCCGATTATAATCTCCC3257579AGGAGAATGGCTGGCTTTGATTAAAACGTATTGCTTTATTCTGTTCTTT
Cabera pusaria genome assembly, chromosome: 10.
OX940895.1:8816559-8816577
TATATTATAATGAGGGCCCAGTGGTGCATT8816559AGGAGAATGGCTGGCTTTGACGCCGTAGTTATTGGGTTAAAAACTTCAC
Sepioteuthis lessoniana genome assembly, chromosome: 15.
OY757918.1:37336289-37336307
TGGGTTAAATAGTACCACTACTGTTCTTCT37336289AGGAGAATGGCTGGCTTTGGCATTAAATAACCTAAGAAGAGTTGATATG
Sepioteuthis lessoniana genome assembly, chromosome: 35.
OY757938.1:4259624-4259642
TGGGTTAAATAGTACCACTACTATTTTTCT4259624AGGAGAATGGCTGGCTTTGGCATTAAATAACCTCCGAAAATTGATGACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAAAGCCAGCCATTCTCCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAAAGCCAGCCATTCTCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.482 | 1.473 | search_plus_done; http://172.18.8.135:50400/match?q=CAAAGCCAGCCATTCTCCT&k=0&no_gap=0&offset=0&limit=50
1.724 | 0.242 | search_minus_done; http://172.18.8.135:50400/match?q=AGGAGAATGGCTGGCTTTG&k=0&no_gap=0&offset=0&limit=27
1.734 | 0.010 | cgi_end;

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