GGGenome | Results

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2025-04-09 14:27:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

C05141A11SK FerrChloL1 Citrus clementina cDNA clone C05141A11, mRNA sequence.
CX296444.1:81-100

GGAAAAAGGCCAAACTCTTTACATTTCTAC81CAACAAGGGGTTTGGCTTTAGACTTCGGACTGTTAGAGGGACAATCCGGA

Citrus unshiu mRNA, clone: GSA1108, 5'-end sequence, expressed in seedling.
DC890929.1:101-120

GGAAAAAGGCCAAACTCTTTACATTTCTAC101CAACAAGGGGTTTGGCTTTAGACTTCGGACTGTTAGAGGGACAATCCGGA

CP-2_G06_040.f1 Citrus paradisi young grapefruit leaf cDNA library Citrus x paradisi cDNA clone CP-2_G06_040 3', mRNA sequence.
EB685504.1:128-147

GGAAAAAGGCCAAACTCTTTACATTTCTAC128CAACAAGGGGTTTGGCTTTAGACTTCGGACTGTTAGAGGGACAATCCGGA

Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:25206062-25206081

GGAAAAAGGCCAAACTCTTTACATTTCTAC25206062CAACAAGGGGTTTGGCTTTAGACTTCGGACTGTTAGAGGGACAATCCGGA

USDA-FP_00235 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00235 5', mRNA sequence.
BQ623144.1:486-505

TCCGGATTGTCCCTCTAACAGTCCGAAGTC486TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

USDA-FP_00883 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00883 5', mRNA sequence.
BQ623792.1:455-474

TCCGGATTGTCCCTCTAACAGTCCGAAGTC455TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

USDA-FP_01465 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01465 5', mRNA sequence.
BQ624374.1:220-239

TCCGGATTGTCCCTCTAACAGTCCGAAGTC220TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

USDA-FP_02177 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_02177 5', mRNA sequence.
BQ625086.1:251-270

TCCGGATTGTCCCTCTAACAGTCCGAAGTC251TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

USDA-FP_6761 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68B12 5', mRNA sequence.
CK739939.1:384-403

TCCGGATTGTCCCTCTAACAGTCCGAAGTC384TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

USDA-FP_6564 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65A12 5', mRNA sequence.
CK740070.1:63-82

TCCGGATTGTCCCTCTAACAGTCCGAAGTC63TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

CGF1004514_B07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_B07 5', mRNA sequence.
CK937107.1:487-506

TCCGGATTGTCCCTCTAACAGTCCGAAGTC487TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

CGF1004746_H02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_H02 5', mRNA sequence.
CK939692.1:532-551

TCCGGATTGTCCCTCTAACAGTCCGAAGTC532TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

Citrus limon mRNA, clone: LLL0956, 5'-end sequence, expressed in leaf.
DC892093.1:144-163

TCCGGATTGTCCCTCTAACAGTCCGAAGTC144TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

Volcani_8_06_H10 Volcani08 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX449374.1:523-542

TCCGGATTGTCCCTCTAACAGTCCGAAGTC523TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

CS00-C3-703-036-H07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY725622.1:683-702

TCCGGATTGTCCCTCTAACAGTCCGAAGTC683TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

CS00-C3-705-005-G02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY735838.1:449-468

TCCGGATTGTCCCTCTAACAGTCCGAAGTC449TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

CS12-C1-001-027-C05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY755355.1:134-153

TCCGGATTGTCCCTCTAACAGTCCGAAGTC134TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

CS12-C1-001-030-C10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY755596.1:133-152

TCCGGATTGTCCCTCTAACAGTCCGAAGTC133TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

CS13-C1-001-030-B02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
EY758006.1:359-378

TCCGGATTGTCCCTCTAACAGTCCGAAGTC359TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

CR05-C1-103-043-H10-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY778348.1:487-506

TCCGGATTGTCCCTCTAACAGTCCGAAGTC487TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCC

CR05-C3-700-090-F10-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY787869.1:492-511

TCCGGATTGTCCCTCTAACAGTCCGAAGTC492TAAAGCCAAACCCCTTGTTGGTAGAAATGTAAACAGTTTGGCCTTTTTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.219 | 0.211 | search_plus_done; http://172.18.8.135:50400/match?q=CAACAAGGGGTTTGGCTTTA&k=0&no_gap=0&offset=0&limit=50
1.022 | 0.802 | search_minus_done; http://172.18.8.135:50400/match?q=TAAAGCCAAACCCCTTGTTG&k=0&no_gap=0&offset=0&limit=46
1.033 | 0.011 | cgi_end;

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