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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-05 15:02:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:11493807-11493826
GTTCAATCTCCTCGATGTCGCTTGATTCAT11493807CAACGAGCTTCCCATGTTCTTTTTTCCTAAGAATCACTTTCCTGGTGATA
Pycnomerus fuliginosus genome assembly, chromosome: 3.
OZ004619.1:8953231-8953250
GAATAGAGGCATGATCCAACGACATCACTC8953231CAACGAGCTTCCCATGTTCTATGGAGACACATCAAATAGTGGAGAAAACA
Brassica oleracea var. viridis mRNA, clone: KALE-131N17, 5' end sequence.
DK505976.1:728-747
TATCACCAGGAAAGTGATTCTTAGGAAAAA728AGAACATGGGAAGCTCGTTGATGAATCAAGCGACATCGAGGAGATTGAAC
odh36g04.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH954941.1:598-617
TATCACCAGGAAAGTGATTCTTAGGAAAAA598AGAACATGGGAAGCTCGTTGATGAATCAAGCGACATCGAGGAGATTGAAC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44308816-44308835
TATCACCAGGAAAGTGATTCTTAGGAAAAA44308816AGAACATGGGAAGCTCGTTGATGAATCAAGCGACATCGAGGAGATTGAAC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47178440-47178459
TATCACCAGGAAAGTGATTCTTAGGAAAAA47178440AGAACATGGGAAGCTCGTTGATGAATCAAGCGACATCGAGGAGATTGAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAACGAGCTTCCCATGTTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACGAGCTTCCCATGTTCT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.109 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=CAACGAGCTTCCCATGTTCT&k=0&no_gap=0&offset=0&limit=50
0.196 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=AGAACATGGGAAGCTCGTTG&k=0&no_gap=0&offset=0&limit=48
0.198 | 0.003 | cgi_end;

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