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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:45:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Trifolium subterraneum genome assembly, chromosome: 4.
OX637464.1:5837116-5837135
ATTAGAGTAAATAAGAAGAATAATAATTTT5837116CAACGCCTGCATCGTGTGATAGCACTGCATCCACGGCGGTAAGGATTAGC
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:54744288-54744307
ATAAATTAGAGAAAATAAGAAGAAGAGTTT54744288CAACGCCTGCATCGTGTGATGGCACTGCATCCACGGCGGTAGGGATTAGC
Dicrocoelium dendriticum genome assembly, chromosome: 12.
OX104061.1:41123092-41123111
GATCGACTAATTTTTCATCAGGCAAGACCT41123092CAACGCCTGCATCGTGTGATTCCTCAAGGGAACACTCCATGATAGAATCC
Dicrocoelium dendriticum genome assembly, chromosome: 1.
OX104063.1:237689789-237689808
GCTCAAATGCTATTTTACCAGGCAGCACCT237689789CAACGCCTGCATCGTGTGATCCTGAACCAAAATGAGGAAAGTAGATATCT
Trifolium repens mRNA, clone: WCC16d12_090, unspecified EST.
FY459626.1:344-363
GCTAATCCTTACCGCCGTGGATGCAGTGCA344ATCACACGATGCAGGCGTTGAAATTATTATTCTTCTTATTTACTCTTAAT
Trifolium repens mRNA, clone: WCC18a20_017, unspecified EST.
FY460259.1:344-363
GCTAATCCTTACCGCCGTGGATGCAGTGCC344ATCACACGATGCAGGCGTTGAAATTATTCTTCTTATTTACTCTAATTTAT
Trifolium repens mRNA, clone: WCC22n04_056, unspecified EST.
FY461948.1:344-363
GCTAATCCTTACCGCCGTGGATGCAGTGCC344ATCACACGATGCAGGCGTTGAAATTATTCTTCTTATTTACTCTAATTTAT
Trifolium repens mRNA, clone: WCC31e01, unspecified EST.
FY464946.1:360-379
GCTAATCCTTACCGCCGTGGATGCAGTGCA360ATCACACGATGCAGGCGTTGAAATTATTATTCTTCTTATTTACTCTTAAT
Trifolium repens mRNA, clone: WCC37j19, unspecified EST.
FY467233.1:345-364
GCTAATCCTTACCGCCGTGGATGCAGTGCA345ATCACACGATGCAGGCGTTGAAATTATTATTCTTCTTATTTACTCTTAAT
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:58604745-58604764
GCTAATCCTTACCGCCGTGGATGCAGTGCA58604745ATCACACGATGCAGGCGTTGAAATTATTATTCTTCTTATTTACTCTTAAT
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:51123912-51123931
GCTAATCCTTACCGCCGTGGATGCAGTGCT51123912ATCACACGATGCAGGCGTTGAAATTATTCTTCTTATTTACTCTAATTTAT
Trifolium dubium genome assembly, chromosome: 12.
OX638073.1:32779956-32779975
GCTAATCCCTACCGCCGTGGATGTAGTGCC32779956ATCACACGATGCAGGCGTTGAAATTCTTCTTCTTATTATTTTCTCTAATT
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:56647569-56647588
GCTAATCCTTATCACCGTGGATGCAGTGCT56647569ATCACACGATGCAGGCGTTGAAATTATTCTTCTTATTTACTACTCTAATT
Dicrocoelium dendriticum genome assembly, chromosome: 2.
OX104064.1:79749202-79749221
GGATTTTATCATGGAGTGTTCCCTTGCGGT79749202ATCACACGATGCAGGCGTTGATGTGCCGCTCGTTGAACGGTTAGTTGATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAACGCCTGCATCGTGTGAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAACGCCTGCATCGTGTGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.358 | 0.349 | search_plus_done; http://172.18.8.135:50400/match?q=CAACGCCTGCATCGTGTGAT&k=0&no_gap=0&offset=0&limit=50
0.827 | 0.469 | search_minus_done; http://172.18.8.135:50400/match?q=ATCACACGATGCAGGCGTTG&k=0&no_gap=0&offset=0&limit=46
0.833 | 0.007 | cgi_end;

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