GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-15 14:10:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Trifolium repens mRNA, clone: WCC15m18_087, unspecified EST.
FY459476.1:40-59
CCATTTTTCCGATCACGCTTCACTCCTCCA40CAATAACCACCGCATCTCCTCCTTCTTCTCCCTCTCTCTCTCTCTCTCTC
Trifolium repens mRNA, clone: WCC25j09_038, unspecified EST.
FY462947.1:79-98
CATTTTTCCGATCCACGCTTCACTCCTCCA79CAATAACCACCGCATCTCCTCCTTCCTCTCTCACCCTCTCTTCTTATACA
Trifolium alexandrinum microsatellite TaSSR333 sequence.
JF767831.1:523-542
CCATTTTCCGATCCACGCTTCACTCCTCCA523CAATAACCACCGCATCTCCTCCTTCTCTCTCCTCATACACGGT
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:58953547-58953566
CATTTTTCCGATCCACCCTTCACTCCTCCA58953547CAATAACCACCGCATCTCCTCCTTCTTCTCTCACTCTCTCTCCTCATACA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:7133007-7133026
TGGTACCGTGTATGAAGAGAGAGAATAAGG7133007AGGAGATGCGGTGGTTATTGTGGAGGAGTGAAGCGTGGATCGGAAAAATG
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:8148967-8148986
TGTATAAGAAGAGAGGGTGAGAGAGGAAGG8148967AGGAGATGCGGTGGTTATTGTGGAGGAGTGAAGCGTGGATCGGAAAAATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAATAACCACCGCATCTCCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATAACCACCGCATCTCCT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.384 | 0.375 | search_plus_done; http://172.18.8.135:50400/match?q=CAATAACCACCGCATCTCCT&k=0&no_gap=0&offset=0&limit=50
0.489 | 0.106 | search_minus_done; http://172.18.8.135:50400/match?q=AGGAGATGCGGTGGTTATTG&k=0&no_gap=0&offset=0&limit=46
0.491 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).