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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:00:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GA__Ed0043B08r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0043B08r, mRNA sequence.
BQ411825.1:72-91
ATTTGGTTATGTTCAAGCTCTAAGAATCTG72CAATCACATTGATGCCAACTGAACTAGCCACATGATGCACACTTCACACA
COT_DD_B08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AY138252) phospholipase D delta isoform 1a [Gossypium hirsutum], mRNA sequence.
DT048657.1:62-81
ATTTGGTTATGTTCAAGCTCTAAGAATCTG62CAATCACATTGATGCCAACTGAACGAGNCACATGATGCACACTTCACACA
COT_DE_F08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to unknown, mRNA sequence.
DT048771.1:48-67
CATTGGTTATGTTCAAGCTCTAAGAATCTG48CAATCACATTGATGCCAACTGAACTAGCCACATGATGCACACTTCACACA
COT_DE_F10 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AY138252) phospholipase D delta isoform 1a [Gossypium hirsutum], mRNA sequence.
DT048773.1:75-94
ATTTGGTTATGTTCAAGCTCTAAGAATCTG75CAATCACATTGATGCCAACTGAACTAGCCACATGATGCACACTTCACACA
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:283830-283849
ATTTGGTTATGTTCAAGCTCTAAGAATCTG283830CAATCACATTGATGCCAACTGAACTAGCCACATGATGCACACTTCACACA
Gossypium herbaceum clone NBRI_C_EYT27PB01APF00 simple sequence repeat marker, mRNA sequence.
HQ527784.1:75-94
TTTGGTTTATGTTCAAGCTCTAAGAATCTG75CAATCACATTGATGCCAACTGAACTAGCCACATGATGCACACTTCACACA
G.hir-stem 1141 PCR amplified cotton stem cDNA Gossypium hirsutum cDNA, mRNA sequence.
DN758637.1:531-550
TGTGTGAAGTGTGCATCATGTGGCTAGTTC531AGTTGGCATCAATGTGATTGCAGATTCTTAGAGCTTGAACATAACCAAAT
GH_TMIRS_176_A07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW513770.1:271-290
TGTGTGAAGTGTGCATCATGTGGCTAGTTC271AGTTGGCATCAATGTGATTGCAGATTCTTAGAGCTTGAACATAACCAAAT
OoSal082 Asian rice gall midge salivary gland cDNA library Orseolia oryzae cDNA, mRNA sequence.
EW779659.1:519-538
GTATTGTTGCTTTTATCTCCGCTTGTTGTC519AGTTGGCATCAATGTGATTGGTATAGATATCTGATATTTACACATCTTTA
2P12-A3-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG454731.1:374-393
TGTGTGAAGTGTGCATCATGTGGCTAGTTC374AGTTGGCATCAATGTGATTGCAGATTCTTAGAGCTTGAACATAACCAAAT
E04-54E04 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK795586.1:613-632
TGTGTGAAGTGTGCATCATGTGGCTAGTTC613AGTTGGCATCAATGTGATTGCAGATTCTTAGAGCTTGAACATAACCAAAT
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:94567713-94567732
TGTGTGAAGTGTGCATCATGTGGCTAGTTC94567713AGTTGGCATCAATGTGATTGCAGATTCTTAGAGCTTGAACATAACCAAAT
Gossypium herbaceum clone NBRI_A2_652 simple sequence repeat marker, mRNA sequence.
HQ527790.1:397-416
TGTGTGAAGTGTGCATCATGTGGCTAGTTC397AGTTGGCATCAATGTGATTGCAGATTCTTAGAGCTTGAACATAACCAAAT
Gossypium herbaceum clone NBRI_B_1426 simple sequence repeat marker, mRNA sequence.
HQ527791.1:142-161
TGTGTGAAGTGTGCATCATGTGGCTAGTTC142AGTTGGCATCAATGTGATTGCAGATTCTTAGAGCTTGAACATAACCAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAATCACATTGATGCCAACT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAATCACATTGATGCCAACT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.458 | 0.450 | search_plus_done; http://172.18.8.135:50400/match?q=CAATCACATTGATGCCAACT&k=0&no_gap=0&offset=0&limit=50
0.975 | 0.517 | search_minus_done; http://172.18.8.135:50400/match?q=AGTTGGCATCAATGTGATTG&k=0&no_gap=0&offset=0&limit=44
0.980 | 0.005 | cgi_end;

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